Hi Dilan,
You have to first set up an .stl-file for each of your links separately. Note that you will probably have to scale the models down by a factor of 1000 (mm as in your CAD-software to m as used in the toolbox). This should be fairly simple using a python script like the one I attached. (note that I am a lousy programmer and comments are in German ;) )
Once you have an .stl-file for each link, you need to put it into a folder in the path rvctools\contrib\arte\robots\ and name the base "Link0.stl", the first moving link "Link1.stl" and so on.
Be careful to name the folder like you name your robot model in MATLAB so that plot3D can find it!
Then you should be able to plot your Robot in 3D.