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Welcome to the general user group for STAR, RNA-seq aligner.
Please be patient when submitting your
first post
- I have to moderate them to avoid junk mail.
Please check
https://github.com/alexd
obin/STAR
for details.
Most stable release:
https://github
.com/alexdobin/STAR/releases/t
ag/2.7.6a
Most recent release:
https://github.com/al
exdobin/STAR/releases/tag/2.7.
8a
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Chahat Upreti
,
Alexander Dobin
4
2/7/20
STAR mapping crashes with Killed:9 even with sufficient memory
Hi Chahat, it looks unlimited. Can you check how much RAM is used by other processes? Also, it would
unread,
killed
memory
STAR mapping crashes with Killed:9 even with sufficient memory
Hi Chahat, it looks unlimited. Can you check how much RAM is used by other processes? Also, it would
2/7/20
yang chen
,
Alexander Dobin
5
11/25/19
STAR Build genome index using repeat genome (exceeded memory limit (123675052 > 122880000))
Great. Thanks Alex. I will follow your suggestions. Best regards, Yang Chen 在 2019年11月23日星期六 UTC-5上午
unread,
STAR
memory
repeat
STAR Build genome index using repeat genome (exceeded memory limit (123675052 > 122880000))
Great. Thanks Alex. I will follow your suggestions. Best regards, Yang Chen 在 2019年11月23日星期六 UTC-5上午
11/25/19
Chahat Upreti
,
Alexander Dobin
9
11/27/19
STAR mapping takes 5 days for a couple dozen samples?
Alex, My BAM files are ~7 GB in size, and there are about 15 of them. It has been running for 5 days
unread,
memory
STAR mapping takes 5 days for a couple dozen samples?
Alex, My BAM files are ~7 GB in size, and there are about 15 of them. It has been running for 5 days
11/27/19