Fatal error when compiling STAR under Linux

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Jun 17, 2021, 3:05:29 PM6/17/21

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Makefile:116: Depend.list: No such file or directory

make -C htslib lib-static

make[1]: Entering directory '/var/snap/amazon-ssm-agent/3552/tools/vif/STAR-2.7.8a/source/htslib'

cc -g -Wall -O2 -I. -DSAMTOOLS=1 -c -o bgzf.o bgzf.c

In file included from bgzf.c:38:0:

htslib/bgzf.h:33:10: fatal error: zlib.h: No such file or directory

#include <zlib.h>

^~~~~~~~

compilation terminated.

Makefile:99: recipe for target 'bgzf.o' failed

make[1]: *** [bgzf.o] Error 1

make[1]: Leaving directory '/var/snap/amazon-ssm-agent/3552/tools/vif/STAR-2.7.8a/source/htslib'

Makefile:126: recipe for target 'htslib/libhts.a' failed

make: *** [htslib/libhts.a] Error 2

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Jun 17, 2021, 3:09:13 PM6/17/21

to rna-star

Hi,

this means that zlib library is missing, you would need to install it before compiling.

Cheers

Alex

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