Segmentation fault (core dumped) during mapping

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Holger Trucks-Jansen

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Mar 2, 2023, 7:25:40 AM3/2/23
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Hi,

I get a Segmentation fault (core dumped) during mapping with starsolo, using star 2.7.10b. Any idea why this is happening? I have also attached my log file. Thank you very much in advance!

Generate genome command: (150bp read length)
STAR --runThreadN 12 \
--runMode genomeGenerate \
--genomeDir ./data/genome_overhang100 \
--genomeFastaFiles ./data/genome/Macaca_fascicularis.Macaca_fascicularis_6.0.dna.toplevel.fa \
--sjdbGTFfile ./data/genome/Macaca_fascicularis.Macaca_fascicularis_6.0.107.gtf \
--sjdbOverhang 100

Main command:
STAR \
--outTmpDir ./out/starsolo_tmp \
--soloType SmartSeq \
--genomeDir ./data/genome \
--readFilesIn ./data/fastq/S509_01_Cs_01_S1_R1_001.fastq ./data/fastq/S509_01_Cs_01_S1_R2_001.fastq \
--soloUMIdedup Exact \
--soloStrand Unstranded \
--soloOutFileNames . genes.tsv barcodes.tsv matrix.mtx matrixSJ.mtx




log.txt
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