I am trying to analyze RNA seq data from FVB murine lung tumors, produced using the HiSeq 4000 platform
(Illumina) as paired-end 150 bp reads. I aligned the sequencing reads to the mm9 (MGSCv37, NCBI build M37) version of Mus
musculus genome using STAR2.7.3a. However, I am concerned because the mm9 reference corresponds to C57Bl/6 mouse genome and unfortunately I have not found any FVB mouse reference genome available for using with STAR.
I would really appreciate your help,