STARsolo mapping process stuck

[sigal graboys]

Hi,

I would like to use STARsolo for seq-drop data and in order to do so i tried to run the real sataset from the STARsolo paper.

during the run of STARsolo it got stuck in the mapping process on a partial fastq file and im not sure what to do..

i tried it on a smaller file of 40 fastq reads and the run was fine.

im adding the Log.out file and would like to get help in this situation.

thanks, 

Sigal.

[Alexander Dobin]

Hi Sigal,

There is nothing suspicious in the log-out file. How much RAM do you have? You would need at least 32GB for this genome parameters.