JC or JCEC

[Alejandra Navarro Martínez]

Hello everybody,

I want to use rMATS, reading the documentation I can't quite understand the difference between JC and JCEC, I don't know which file I should use to carry out my study. in which I want to know what splicing events occur in each gene.

I have looked at the diagram available in README, but I can't quite understand it.

Thank you

[kutsc...@gmail.com]

Here is a previous discussion of JC and JCEC: https://github.com/Xinglab/rmats-turbo/issues/45#issuecomment-688843471

>   The JC files only consider "junction counts" while the JCEC files consider both "junction counts" and "exon counts". [...] The JC files are more strict in that they only count the junction reads which provide better evidence to support the event. The JCEC files include the additional exon count data which may result in more significant events from the statistical analysis. Whether you want to use JC or JCEC is up to you

Eric