rMATS outputs ID

[Aishwarya Griselda Jacob]

Hello,

My rMATS outputs SE.JC.txt start from ID number 65 and is missing many rows until about row 120. I have not encountered this before. Has anyone seen this before?

Sorry if this is redundant.

Thanks,

Aishwarya

[kutsc...@gmail.com]

https://github.com/Xinglab/rmats-turbo/issues/531
> When the statistical test is run, the final output files like SE.MATS.JC.txt are filtered to events where there is at least 1 read for each isoform and at least 1 read in each sample group. The fromGTF files are not filtered

You can run with --statoff to disable the statistical test and the filter

Eric