Problem during Installation

[Sara El Guendouzi]

This is the error I am getting while trying to install rmats

I am the running the code in the bash:

(base) sara@Sara-ElGuendouzi:/mnt/c/WINDOWS/system32/rmats-turbo$ python ./rmats.py --b1 ./b1.txt --b2 ./b2.txt --gtf ./Homo_sapiens.GRCh37.75.gtf --readLength 50 --od ./test_data_bam_out --tmp ./test_data_bam_tmp
Traceback (most recent call last):
  File "/mnt/c/WINDOWS/system32/rmats-turbo/./rmats.py", line 19, in <module>
    from rmatspipeline import run_pipe
ModuleNotFoundError: No module named 'rmatspipeline'

Can anybody give me tips to resolve it ?

[kutsc...@gmail.com]

No module named 'rmatspipeline' happens when the code cannot find a compatible compiled rmatspipeline*.so file. The .so file is created by the build. How did you build or install rmats? There could have been an error when you ran the build. Here's a related post: https://github.com/Xinglab/rmats-turbo/issues/384

Eric

[Sara El Guendouzi]

Thank you so much Eric ! I solved the problem using the link you sent !!

Many thanks to you ! 

Sara