“ImportError: libgfortran.so.1: cannot open shared object file: No such file or directory”

[罗珮云]

Hi Eric,

   I don't know if i successfully processed my work when this error exist.I've installed gfortran in my rmats env,but that didn't work.

i can see the events,so should i just ignore the bug and it won't influence my result or i need to fix it?

Best regards.

[kutsc...@gmail.com]

Hi,

libgfortran would be used by the statistical model. If your output files like SE.MATS.JC.txt have values for the PValue and FDR columns then it should be fine to ignore that error

I just tried installing rmats with:
conda install -c conda-forge -c bioconda rmats=4.2.0

And in the lib/ directory of the conda environment there was libgfortran.so.5. I was able to run rmats using that conda environment and get PValue and FDR results. I'm not sure if you can install libgfortran.so.1 from conda, but installing rmats to a new conda environment with the command above should work

Eric