fbd_tree ~ dnConstrainedTopology(fbd_dist,constraints=constraints) gets hungup.

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Peter Wagner

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Sep 30, 2021, 8:31:54 PM9/30/21
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Hey folks,

I am trying to run a skyline model on some Devonian trilobites. However, RevBayes cannot complete the command: 
 fbd_tree ~ dnConstrainedTopology(fbd_dist,constraints=constraints);
with:
 constraints = v(ingroup);
and:
fbd_dist =  dnFossilizedBirthDeathProcess(originAge=origin_time,lambda=cladogenesis_rate, mu=extinction_rate, psi=psi, rho=rho, taxa=taxa, condition="sampling",lambdaTimeline=timeline,muTimeline=timeline,psiTimeline=timeline);

Is there a common cause for this? (I have tried it with:
fbd_dist =  dnFossilizedBirthDeathProcess(originAge=origin_time,lambda=cladogenesis_rate, mu=extinction_rate, psi=psi, rho=rho, taxa=taxa, condition="sampling",timeline=timeline);
but I get the same problem.)


Orlando Schwery

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May 10, 2024, 9:26:14 PM5/10/24
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I think one of the bug fixes in v1.2.3 fixed  that for a case using dnConstrainedTopology on dnBirthDeathSamplingTreatment, so perhaps it applies to your case too.

Best,
Orlando
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