RetroBioCat

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Will Finnigan

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Sep 2, 2020, 7:57:33 AM9/2/20

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This is a google group for discussion on https://retrobiocat.com

Feel free to ask questions, make suggestions, or post cool biocatalytic pathways you've come up with using RetroBioCat

Will

Иван Радкевич

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Jan 8, 2021, 5:51:57 PM1/8/21

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Hi everyone,

I was wondering, if I need to build a specific pathway namely in E. Coli, how do I do that, except manually exploring all the pathways generated and checking which is the closest one to existing E Coli metabolic pathways, with minimal number of genes to add/knock out?

Thanks everyone,

Cheers,
Ivan

среда, 2 сентября 2020 г. в 13:57:33 UTC+2, wjafi...@gmail.com:

Will Finnigan

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Jan 9, 2021, 4:29:39 PM1/9/21

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Hi Ivan,

Good question. At the moment RetroBioCat focuses on building biocatalytic pathways, rather than for building pathways which start from metabolism (see figure 1 in the paper, synthetic biology vs biocatalysis). Retropath is better suited to what you want to do.

We may look into offering automated suggestions for pathways which go back metabolism in the future.

Kind regards,

Will

Иван Радкевич

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Jan 10, 2021, 10:35:18 AM1/10/21

to Will Finnigan, RetroBioCat

Dear Will,

Thank you very much,

Best regards,
Ivan

сб, 9 янв. 2021 г. в 22:29, Will Finnigan <wjafi...@gmail.com>:

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