Script to calculate N50 size from set of contigs/scaffolds

[Keith Bradnam]

This was used as part of the Assemblathon. Calculates N50 length and many other basic metrics from a FASTA formatted file of contigs or scaffolds.

http://korflab.ucdavis.edu/Datasets/Assemblathon/Assemblathon2/Basic_metrics/assemblathon_stats.pl

[Keith Bradnam]

Oops, forgot to mention that script requires FAlite.pm Perl module to be installed

[Prakash Raj Timilsina]

Dear Keith,

Thank you so much.

Prakash Raj Timilsena (PR)

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Thanks,

Prakash Raj Timilsina