Project config is stored in git on the refs/meta/config branch. If you find the commit(s) that correspond to the mistaken updates, you can simply revert them.
If the updates were done in the UI with the "save for review" option, you will be able to find the changes in the list of merged changes and revert via the UI. Otherwise, you'll need to fetch the project's refs/meta/config branch and revert it locally with the git command line.
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