Well DD#3, I was having a real problem understanding the question, and
I think you have already said it was answered.
But I would like to try here just to see if I finally have a lock on
the understanding of it all.
On a Kreg jig they set up certain parameters for each length of screw
depending on the wood sizes. The side you drill the enlarged hole into
is the only thing you can play with in order to sink the screw in
further on the piece you are attacking. Problem is, if there is a
preset 1/2" gap between the shoulder of the screw and the piece you
are attaching it too, and you shorten that any appreciable distance,
say 1/4" then yes the screw will go in further, but the total strength
decreases depending on the hardness of the wood you inserted the screw
into. Shortening the "gap" weakens the joint considerably. I tried it
at home just to see.
The other thing that make a difference is the type of screw, the one
designed for hardwoods, or for softwoods.
The other thing that can destroy the strength of the joint is having
the clutch set too tight on a drill motor or using an impact drill,
they will many times pull the screw in a lot further than necessary
thus shortening the "gap" between the shoulder for the screw and the
exit portion of that piece of wood.
And yes, it would have been far easier to draw a picture than say all
of this. :)
Hope I was clear enough and didn't muck things up.