RCytoscape

Dear all, I get error with the createNetworkFromDataFrames function. Error in curl::curl_fetch_memory

OK, Thank you very much! On Saturday, December 27, 2014 11:46:10 PM UTC+1, Paul Shannon wrote: Hi Tao

Paul The crash occurred twice after it had been going for 25 rounds (1600 nodes, 25000 edges) and I

Robert You can use addGraphToGraph. Below are two functions that you may find useful; "loadedges

Paul and co., I am teaching a small tutorial on RCytoscape for new users of Cytoscape. Mac users are

Hi Paul I am giving a tutorial on RCytoscape and note that Cytoscape 3.1 is out - very exciting! Do

Hi Paul Can you tell me please the status of RCytoscape talking to Cytoscape 3.1 ? I have a method to

Paul and Quaid There is interest in directly accessing GeneMANIA (or String) directly from R (or

Hi Ricardo, Sending lists works reliably. I think your list is actually a single string, not really a

Robert This certainly works. I created a function to do this, pasted below, for cytoscape files in

Hi Mark, Sorry for my slow reply. I have seen this odd error a few times, also. It left me completely

Paul Ah - yes, that is the problem. Thanks, Mark On May 14, 2013, at 11:54 AM, Paul Shannon wrote:

Hi Mark, I think those odd umlaut characters will help us to track down this bug. Somehow, for

Paul We experimented with pie graph nodes previously (using setNodeImageDirect) and ran into the

Hi Robert, As I remember it (I may have the details wrong) Jan and I did not find a way to do this.

Hi Bill, That the python test works is good news. We should be able to figure this out. We need now

HI Mark, This is very cool! Could i persuade you to post this to cytoscape-discuss? I've been

My dumb mistake in a residual trace statement. write (sprintf ('format', args)) should be

Paul I solved a problem that I mentioned before, where setNodePosition() returned an error. The trick

Anna reported the long-standing (but easily-fixed) RCy cryptic behavior when you call selectNodes

And to proceed with your project in the meantime, here is a slight modification of the code you sent:

A message I just sent out to cytoscape-discuss. Cheers! - Paul There is at least a small audience of

Hi Mark, This rings a bell. I vaguely recall someone on the Cytoscape email list explaining (maybe

Hi January, Glad to hear it worked out. Until reading your note below, I did not know that Cytoscape

Paul Of course, getGraph! I should have perused the functions more carefully. Sounds like it may be

I would welcome this added feature! Thanks -burak On Thursday, May 3, 2012 12:02:31 PM UTC-7, Paul

Well, I select them in the Cytoscape window and use deleteSelectedEdges(cw) I think this is related

Dear Eleonora, I am glad you are giving RCytoscape a try. The usual cause of this problem you report

Sorry, Burak, my error. I renamed the method 'pluginVersion' to minimize name collisions. I

Dear Ignacio, Sorry for taking several days to get back to you. I just ran some tests in which 1) an