I know Mike Varley at Black Mountain Cycles is a big fan of the Minimoto and specs them for a lot of Monstercross builds, which has a max tire size of 700x50. Paul discusses fender clearance in
this video, but as Laing has said, there are other variables at play, namely the relationship between rim width and stud spacing and specific tire fit.
I can take some measurements when I get home, but I have a pair of Motolites set up with Cliffhangers. The pads are set to the shortest extension and the arms had to be splayed outward a bit for brake pad clearance, thus reducing the vertical clearance. Not a problem with Motolites but this is significant in your case because you're flirting with the maximum allowable clearance for the Minimoto. I think a wide rim will be just enough to push you over the edge. Motolites would likely be a much better option. If you are dead-set on short pull levers, I'd recommend cantilevers.
Side note: I remember seeing a set of custom Motolite brake pad collars on eBay that were designed to get the pads a bit further from the rim, which would allow the arms to sit vertically with wider rims. I thought some guy was making them, but it was apparently a one-off and they're long gone. With the popularity of wide rims (like Cliffhangers/Atlas/Quills/etc.), I think it makes sense and I'd absolutely pay extra for an alternate set of pad collars that work a bit better with my Cliffhangers.
I'm currently going through a big cantilever phase, so I've been considering putting up my Motolites if there's anyone who wants to trade a set of Paul cantilever brakes.