That's weird, is it located in the same directory as the alignment file?
On 02.08.21 12:03, Dijana Cortan wrote:
> Hello all,
> I have run
> >>> raxmlHPC -m ASC_GTRCAT -V --K80 --asc-corr=felsenstein -n out_ -s
> varsite.phy -p 12345 -b 54321 -q part
> I used/ascbias.py/
and /deleteAlignColumn.pl /for removing invariable
> sites considering that asc requres just varsites, both work perfectly.
> But when it comes to runing raxml (raxml-8.2.8) with -q part I have
> problem. Considering I am running ascertainment bias correction I need
> part file, but I am getting error >> "/The file part you want to open
> for reading does not exist, exiting .../"
> this is my part file>>
> ASC_GTRCAT, p1=1-2177
> What is wrong with it? Why it does not recognise part file? Anyone with
> same problem and possible solution? Any advice will be greatly appreciated!
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Alexandros (Alexis) Stamatakis
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
Affiliated Scientist, Evolutionary Genetics and Paleogenomics (EGP) lab,
Institute of Molecular Biology and Biotechnology, Foundation for
Research and Technology Hellas