Reference on phylogenetic analysis using genotype likelihood data

[Yasuto ISHII]

Hi all, 

I am interested in reconstructing phylogenies using low-coverage whole genome sequencing data. Recently, I came across a post on using genotype likelihood data for phylogeny reconstruction (see link), and it sparked my curiosity about the methodologies involved.

If you know of any literature that decribes this phylogenetic analysis method, I’d really appreciate it if you could share it with me.

Thanks in advance !

Yasuto

[Oleksiy Kozlov]

Hi Yasuto,

this method is best described in our CellPhy paper:

https://doi.org/10.1186/s13059-021-02583-w

Best,
Oleksiy

On 03.02.25 18:02, Yasuto ISHII wrote:
> Hi all,
>
> I am interested in reconstructing phylogenies using low-coverage whole genome sequencing data.
> Recently, I came across a post on using genotype likelihood data for phylogeny reconstruction (see

> link <https://groups.google.com/g/raxml/c/emYhc-08AiE?pli=1>), and it sparked my curiosity about the

> methodologies involved.
> If you know of any literature that decribes this phylogenetic analysis method, I’d really appreciate
> it if you could share it with me.
>
> Thanks in advance !
> Yasuto
>

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[Yasuto ISHII]

Hi Oleksiy,

Thanks a lot!

Best,

Yasuto

2025年2月4日火曜日 22:47:38 UTC+9 Oleksiy Kozlov: