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# Stacks v2.5; Phylip interleaved; June 23, 2021
# Locus ID LocusCnt Sequence position Length
155 1 1 642
159 2 643 697
172 3 1340 765
179 4 2105 830
189 5 2935 822
195 6 3757 738
273 7 4495 150
311 8 4645 726
DNA, p1=1-642
DNA, p2=643-1339
DNA, p3=1340-2104
DNA, p4=2105-2934
DNA, p5=2935-3756
DNA, p6=3757-4494
DNA, p7=4495-4644
DNA, p8=4645-5370
You can see that the information in populations.all.phylip.log corresponds to the partitioned loci generated by STACKS.
If you have these files, then you should be able to create a partition file using some bash commands.
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