-f a -x bootstrapping prompted error

25 views
Skip to first unread message

Marco Mancuso

unread,
Feb 5, 2024, 7:26:23 AMFeb 5
to raxml
Hello,
I'm trying to run a ML analysis on my MacBook Pro (MacOS Monterey 12.7.1. 2,7 GHz Dual-Core Intel Core i5) in RAxML on the latest version available at https://github.com/stamatak/standard-RAxML.

I was trying to run the following code: "/path/to/raxmlHPC-AVX2 -f a -x 482094802945 -# 10000 -J MR -m GTRGAMMAI -o outgroup_taxon -s data.fasta -n results_ML -p 482094802945 -q partitions.txt", but RAxML always prompts the error "The file  you want to open for reading does not exist, exiting ..." when the -f a - x 482094802945 option is specified. Otherwise, the program reads the rest of my data properly. What could the issue be? Otherwise it runs properly.

Best regards,
Marco.

Alexandros Stamatakis

unread,
Feb 6, 2024, 6:16:46 AMFeb 6
to ra...@googlegroups.com
I think the problem might be an extra space or invalid character you
might have added somewhere, e.g.,

-f a - x 482094802945

the s[pace between - and x will cause an issue.

Also, please consider switching to the new version of RAxML:

https://github.com/amkozlov/raxml-ng

Alexis
> --
> You received this message because you are subscribed to the Google
> Groups "raxml" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to raxml+un...@googlegroups.com
> <mailto:raxml+un...@googlegroups.com>.
> To view this discussion on the web visit
> https://groups.google.com/d/msgid/raxml/cd876a2a-da2a-43eb-b9d5-7b1179ea28e5n%40googlegroups.com <https://groups.google.com/d/msgid/raxml/cd876a2a-da2a-43eb-b9d5-7b1179ea28e5n%40googlegroups.com?utm_medium=email&utm_source=footer>.

--
Alexandros (Alexis) Stamatakis

ERA Chair, Institute of Computer Science, Foundation for Research and
Technology - Hellas
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology

www.biocomp.gr (Crete lab)
www.exelixis-lab.org (Heidelberg lab)
Reply all
Reply to author
Forward
0 new messages