NetRAX software for Maximum Likelihood based inference of phylogenetic networks
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Alexandros Stamatakis
Sep 1, 2021, 5:08:06 AM9/1/21
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Dear Users,
As you might be interested in this, our new software for maximum
likelihood based inference of phylogenetic networks was just released:
https://www.biorxiv.org/content/10.1101/2021.08.30.458194v1
Alexis
--
Alexandros (Alexis) Stamatakis
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
Affiliated Scientist, Evolutionary Genetics and Paleogenomics (EGP) lab,
Institute of Molecular Biology and Biotechnology, Foundation for
Research and Technology Hellas
www.exelixis-lab.org
As you might be interested in this, our new software for maximum
likelihood based inference of phylogenetic networks was just released:
https://www.biorxiv.org/content/10.1101/2021.08.30.458194v1
Alexis
--
Alexandros (Alexis) Stamatakis
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
Affiliated Scientist, Evolutionary Genetics and Paleogenomics (EGP) lab,
Institute of Molecular Biology and Biotechnology, Foundation for
Research and Technology Hellas
www.exelixis-lab.org
chris blair
Jul 6, 2022, 9:52:23 PM7/6/22
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Hey Alexis,
Is this software only for Linux systems?
Chris
Alexandros Stamatakis
Jul 7, 2022, 12:25:19 AM7/7/22
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Dear Chris,
Yes, but you can of course install a virtual machine to emulate Linux.
Alexis
> www.exelixis-lab.org <http://www.exelixis-lab.org>
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Yes, but you can of course install a virtual machine to emulate Linux.
Alexis
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Norbert
Sep 13, 2022, 11:55:33 AM9/13/22
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Dear Alexis,
If have made first encouraging experiences with NetRAX but wonder if there is a way to install it on a UNIX hpc system, because calculation of more complex reticulation scenarios takes some time.
The GitHub website https://github.com/lutteropp/NetRAX only explains its installation on Ubuntu.
Norbert
Alexandros Stamatakis
Sep 14, 2022, 1:58:57 AM9/14/22
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Dear Norbert,
The installtion should work on any Linux-based system as long as cmake,
git, gcc and the mentioned dependencies are installed.
The NetRax repo simply states that it has been tested under Ubuntu.
Alexis
> <https://groups.google.com/d/msgid/raxml/ec6e482c-3919-4a92-ba7b-4eccd8221f49n%40googlegroups.com?utm_medium=email&utm_source=footer>.
The installtion should work on any Linux-based system as long as cmake,
git, gcc and the mentioned dependencies are installed.
The NetRax repo simply states that it has been tested under Ubuntu.
Alexis
> www.exelixis-lab.org <http://www.exelixis-lab.org>
>
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