1000 bootstrap replicates in RAxML-NG (Web server)

[Anubha Pathak]

Hi,

I am new to RAxML and need some basic guidance:

1 I have to generate 11 trees of 80-100 sequences each with a bootstrapping of 1000 replicates. However, the RAxML is allowing only 100 replicates. Is there any possibility of increasing the number of replicates to 1000?.

Thanks :)

[Chiranjeevi Pasala]

You can change 1000 instead of 100 while executing a command 

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[Alexandros Stamatakis]

Yes, you just specify it in the command line.

Please have a look at the RAxML manual.

Alexis

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Alexandros (Alexis) Stamatakis

Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
Affiliated Scientist, Evolutionary Genetics and Paleogenomics (EGP) lab,
Institute of Molecular Biology and Biotechnology, Foundation for
Research and Technology Hellas

www.exelixis-lab.org