first, this command will generate bootstrap trees only, but not the ML, please read raxml-ng
documentation and tutorial:
Second, your dataset is really large, please either try to reduce it, or you would probably need a
larger servers / multiple cluster nodes to analyze it in reasonable time.
Hope this helps,
On 29.07.21 06:16, Anitha Bavikatte wrote:
> Hello everyone,
> I created phylip format from vcf (vcf2phylip) has 85 samples (Alignment sites/patterns: 88863527 /
> 81088710), started raxml-ng by using
> * "/raxml-ng --bootstrap --msa phylogeny.min4.phy --model GTR --bs-trees 200 --threads 10 -outgroup"*
> command, how much time it will take to create the final best model if any parameters need to add to
> improve the efficiency of the tool. my system configuration is 16 cores, 503 GB RAM.
> Thanks and regards,
> Anitha B N
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