error: thread-local storage is not supported for the current target

[Rodolfo Probst]

Hi,

I am trying to install ParGenes on a Mac (OS X Yosemite 10.10.5) and I am getting the following error:

In file included from /Users/longinolab/ParGenes/raxml-ng/src/common.h:23:
/Users/longinolab/ParGenes/raxml-ng/src/ParallelContext.hpp:89:10: error:
thread-local storage is not supported for the current target
static thread_local size_t _thread_id;
^
1 error generated.
make[2]: *** [src/CMakeFiles/raxml_module.dir/ICScoreCalculator.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
1 error generated.
make[2]: *** [src/CMakeFiles/raxml_module.dir/AncestralStates.cpp.o] Error 1
1 error generated.
make[2]: *** [src/CMakeFiles/raxml_module.dir/CommandLineParser.cpp.o] Error 1
1 error generated.
make[2]: *** [src/CMakeFiles/raxml_module.dir/Checkpoint.cpp.o] Error 1
make[1]: *** [src/CMakeFiles/raxml_module.dir/all] Error 2
make: *** [all] Error 2

Benoit mentioned that it looks like a RAxML-NG compilation issue specific to OS X. Couldn't find if someone bumped to the same issue while compiling ParGenes, so I if so, I apologize for duplicating the posts. I will try to build using clang and will come back to report if it worked. Appreciate any feedback.

Thanks,

Rodolfo Probst

[Benoît Morel]

Alexey, this seems to be an OS X specific compilation error with raxml-ng. Any idea about how to fix it?

[Alexey Kozlov]

Hi Rodolfo,

seems like your OSX/XCode version is too old, please see here:

https://stackoverflow.com/questions/28094794/why-does-apple-clang-disallow-c11-thread-local-when-official-clang-supports/29929949#29929949

Best,
Alexey

On 26.06.20 17:39, Rodolfo Probst wrote:
> Hi,
>
>
>
> I am trying to install ParGenes on a Mac (OS X Yosemite 10.10.5) and I am getting the following error:
>
>
> In file included from /Users/longinolab/ParGenes/raxml-ng/src/common.h:23:
> /Users/longinolab/ParGenes/raxml-ng/src/ParallelContext.hpp:89:10: error:
> thread-local storage is not supported for the current target
> static thread_local size_t _thread_id;
> ^
> 1 error generated.
> make[2]: *** [src/CMakeFiles/raxml_module.dir/ICScoreCalculator.cpp.o] Error 1
> make[2]: *** Waiting for unfinished jobs....
> 1 error generated.
> make[2]: *** [src/CMakeFiles/raxml_module.dir/AncestralStates.cpp.o] Error 1
> 1 error generated.
> make[2]: *** [src/CMakeFiles/raxml_module.dir/CommandLineParser.cpp.o] Error 1
> 1 error generated.
> make[2]: *** [src/CMakeFiles/raxml_module.dir/Checkpoint.cpp.o] Error 1
> make[1]: *** [src/CMakeFiles/raxml_module.dir/all] Error 2
> make: *** [all] Error 2
>
>
>

> Benoit mentioned that it looks like a RAxML-NGcompilation issue specific to OS X. Couldn't find if

> someone bumped to the same issue while compiling ParGenes, so I if so, I apologize for duplicating
> the posts. I will try to build using clang and will come back to report if it worked. Appreciate any
> feedback.
>
>
> Thanks,
>
> Rodolfo Probst
>

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