mulitstate-MK & multistate-ORDERED partitions

[steven.wad...@gmail.com]

Hi,

I'd like to use RAxML to analyze a combined dna/morphology dataset. There are 111 taxa, 5 genes, and 403 morpholgical characters. I've already used PartitionFinder to find the best subset scheme for the dna and the result suggests that each of these subsets should use a GTRGAMMA model.

Some of the morphological characters are scored as binary, some are scored as multistate-unordered, and some are scored multstate-ordered. Is it possible to use a partions file in RAxML to partition the morphological characters into two groups... multistate-MK characters and multistate-ORDERED characters? Or do I need to analyze the entire morphology partition as either MK or ORDERED?

Thanks,

Steven

[Alexandros Stamatakis]

Unfortunately it's either all MK or all ORDERED

alexis

>
> Thanks,
> Steven
>
> --
> You received this message because you are subscribed to the Google
> Groups "raxml" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to raxml+un...@googlegroups.com
> <mailto:raxml+un...@googlegroups.com>.
> For more options, visit https://groups.google.com/d/optout.

--
Alexandros (Alexis) Stamatakis

Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
Adjunct Professor, Dept. of Ecology and Evolutionary Biology, University
of Arizona at Tucson

www.exelixis-lab.org