RAxML output scale bar value in a FigTree produced phylogeny?

[John Little]

Hi,

I've used FigTree to graph my RAxML best-tree output,  In analyses that produced the best-tree I used default RAxML settings via the CIPRES portal, changing only the number of bootstraps.   The value below the FigTree scale bar is 0.06; can anyone please advise what this scale-bar value is likely to represent?

Regards

[Andre J. Aberer]

Hi John,

it is a maximum likelihood estimate of how many substitutions have
occurred on average per site between the two nodes in the tree.

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Best regards,
Andre

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Sent with my mu4e

[John Little]

Thank you

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