GTRGAMMAI model in RaxML-ng

[Arianna Thomas-Cabianca]

Hi Everyone, 

I changed my computer to a Mac (M3) and I had problems running the standard RaxML.

I installed the RaxML-ng, but I do not find the model equivalent to GTRGAMMAI (=GTR+G+I).

How do I add the "I" to the GTR+G model in RaxML-ng to estimate the proportion of invariant sites?

Thank you!

Arianna

[Alexandros Stamatakis]

Dear Arianna,

Please check the detailed RAxML-NG documentation here:

https://github.com/amkozlov/raxml-ng/wiki

Alexis

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Alexandros (Alexis) Stamatakis

ERA Chair, Institute of Computer Science, Foundation for Research and
Technology - Hellas
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology

www.biocomp.gr (Crete lab)
www.exelixis-lab.org (Heidelberg lab)

[Oleksiy Kozlov]

In particular:

https://github.com/amkozlov/raxml-ng/wiki/Input-data#single-model

GTR+G+I should actually work

[Arianna Thomas-Cabianca]

Thank you very much Alexandros and Oleksiy

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Arianna Thomas-Cabianca. PhD.

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