An error while running raxml function

[Shengxin Tu]

Hi,

I got an error when I used raxml function to construct a tree. 

Here is what I did:

alignment.rax.gtr <- raxml(TS3alignment,

m="GTRGAMMAIX", # model

f="a", # best tree and bootstrap

p=1234, # random number seed

x=2345, # random seed for rapid bootstrapping

N=100, # number of bootstrap replicates

file="alignment", # name of output files

exec="raxmlHPC-PTHREADS-SSE3", # name of executable

threads=20

)

The following is the error I got.

Thank you,

Shengxin

[Alexey Kozlov]

Hi Shengxin,

please re-run RAxML without R wrapper, using the command line below, and
check the output for error messages.

Best,
Alexey

On 28.02.19 19:01, Shengxin Tu wrote:
> Hi,
>
> I got an error when I used raxml function to construct a tree.
>
> Here is what I did:
> alignment.rax.gtr <- raxml(TS3alignment,
> m="GTRGAMMAIX", # model
> f="a", # best tree and bootstrap
> p=1234, # random number seed
> x=2345, # random seed for rapid bootstrapping
> N=100, # number of bootstrap replicates
> file="alignment", # name of output files
> exec="raxmlHPC-PTHREADS-SSE3", # name of executable
> threads=20
> )
>
> The following is the error I got.
>
>

> Screen Shot 2019-02-28 at 12.59.34 PM.png
>
>
>
> Thank you,
> Shengxin
>

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