Hi,
I am running a concatenated alignment with recoded data using the Dayhoff6 code. I am using the MULTI6_GTR model in the partition on file and the commands I am using are the following:
raxml-ng --msa HG_50_recoded_Dayhoff6.fas --model HG_50_partitions_raxml6.txt --brlen unlinked --threads 15 --prefix DF6 --seed 1234 --bs-trees 100 --blopt nr_safe
The raxml-ng version is the last available in github, because I installed it some days ago only.
The run is terminating with an error and I don't know what the problem is.
raxml-ng: /home/alex/hits/raxml-ng/libs/pll-modules/src/optimize/pll_optimize.c:2003: pllmod_opt_optimize_branch_lengths_local_multi: Assertion `new_loglikelihood - loglikelihood > new_loglikelihood * BETTER_LL_TRESHOLD' failed.
raxml-ng: /home/alex/hits/raxml-ng/libs/pll-modules/src/optimize/pll_optimize.c:2003: pllmod_opt_optimize_branch_lengths_local_multi: Assertion `new_loglikelihood - loglikelihood > new_loglikelihood * BETTER_LL_TRESHOLD' failed.
Aborted (core dumped)
I could use some help here. Thank you in advance.
Marta