was this obtained with RAxML? I guess not, but rather with CONSEL maybe?
In that case you should read the respective papers and the CONSEL
documenttaion,
Alexis
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Alexandros (Alexis) Stamatakis
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
Adjunct Professor, Dept. of Ecology and Evolutionary Biology, University
of Arizona at Tucson
www.exelixis-lab.org