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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to
help@r-inla.org
. You are of'course free to comment on questions from others as well.
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koorosh kazemi
,
Helpdesk (Haavard Rue)
3
Jul 26
Spatial regression using INLA
[rest of the email] I see, its 18 stations, not 20... here is the package https://cran.r-project.org/
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Spatial regression using INLA
[rest of the email] I see, its 18 stations, not 20... here is the package https://cran.r-project.org/
Jul 26
Zirou Zhou
,
Håvard Rue
2
Jul 26
Using Hieratical model for beta precision parameters
as of now, the priors for the \phi_i's, are independent. so no hierarchical prior is available as
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Using Hieratical model for beta precision parameters
as of now, the priors for the \phi_i's, are independent. so no hierarchical prior is available as
Jul 26
Gabrielle Koerich
, …
Finn Lindgren
19
Jul 26
Varying slopes LGCP model?
Hi, I'm on holiday with limited email time. If your predictor depends on species, that must be
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Varying slopes LGCP model?
Hi, I'm on holiday with limited email time. If your predictor depends on species, that must be
Jul 26
Aria
, …
Janet Van Niekerk
6
Jul 25
hazard for weibullsurv
Yes for the hazard ratio's for example you need to multiply the coef with alpha. If you want the
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hazard for weibullsurv
Yes for the hazard ratio's for example you need to multiply the coef with alpha. If you want the
Jul 25
sekar dewi
, …
Helpdesk (Haavard Rue)
7
Jul 24
Unsual Mean Fitted Values
Thank you Dr. Havard for your response. I do really appericate it. I'm new in this INLA modelling
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Unsual Mean Fitted Values
Thank you Dr. Havard for your response. I do really appericate it. I'm new in this INLA modelling
Jul 24
Ebenezer Ogunsakin
, …
Helpdesk (Haavard Rue)
5
Jul 23
Bayesian spatiotemporal model
Thanks for your feedback. Attached here are the dataset and r command. Thank you. On Tuesday, July 23
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Bayesian spatiotemporal model
Thanks for your feedback. Attached here are the dataset and r command. Thank you. On Tuesday, July 23
Jul 23
Tatiana Pineda Portella
, …
Helpdesk (Haavard Rue)
5
Jul 23
Discrepancy in Spatiotemporal Model Outcome
efficiency is what sense? On Sat, 2024-07-20 at 06:33 +0000, Moussa Tao wrote: > Hello, how to
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Discrepancy in Spatiotemporal Model Outcome
efficiency is what sense? On Sat, 2024-07-20 at 06:33 +0000, Moussa Tao wrote: > Hello, how to
Jul 23
Zirou Zhou
,
Helpdesk (Haavard Rue)
3
Jul 23
Have different precision parameters for different group
Thank you so much, This problem go solved. However, three random effects still result in crash. I
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Have different precision parameters for different group
Thank you so much, This problem go solved. However, three random effects still result in crash. I
Jul 23
Helpdesk
, …
Roel van Klink
19
Jul 23
Re: [r-inla] GMRFLib_2order_approx: rescue NAN/INF values in logl for idx
I attached a revised code. comments - 'sd.res' was to high - when using replicate=r then its
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Re: [r-inla] GMRFLib_2order_approx: rescue NAN/INF values in logl for idx
I attached a revised code. comments - 'sd.res' was to high - when using replicate=r then its
Jul 23
Jan jaap poos
,
Elias T. Krainski
2
Jul 22
Making spatial
Yes, because the model assumes continuous time. Following the code in that book, the prediction data
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Making spatial
Yes, because the model assumes continuous time. Following the code in that book, the prediction data
Jul 22
Ebenezer Ogunsakin
Jul 21
INLA PROBLEM
Good day. Please can anyone help with how to handle this error *** inla.core.safe: The inla program
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INLA PROBLEM
Good day. Please can anyone help with how to handle this error *** inla.core.safe: The inla program
Jul 21
Virgilio Gómez Rubio
, …
Finn Lindgren
10
Jul 21
Copy feature in inlabru
Hi, Yes, the problem is that method 1 evaluates the raster multiple times, but method 2 only when
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Copy feature in inlabru
Hi, Yes, the problem is that method 1 evaluates the raster multiple times, but method 2 only when
Jul 21
Kai
,
Helpdesk (Haavard Rue)
2
Jul 20
Optimizing underestimated prediction with missing covariates in recent years
On Thu, 2024-07-18 at 02:52 -0700, Kai wrote: > Dear R-INLA community > I am doing spatial-
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Optimizing underestimated prediction with missing covariates in recent years
On Thu, 2024-07-18 at 02:52 -0700, Kai wrote: > Dear R-INLA community > I am doing spatial-
Jul 20
Alexander Jack
,
Helpdesk (Haavard Rue)
4
Jul 20
Interpretation of BLUPs
In the same regression as this random ar process On Sat, Jul 20, 2024, 11:15 Alexander Jack <
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Interpretation of BLUPs
In the same regression as this random ar process On Sat, Jul 20, 2024, 11:15 Alexander Jack <
Jul 20
Ruby Ji
Jul 20
Barrier Q
Dear all, I am trying to better understand how the precision matrix Q is calculated in the barrier
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Barrier Q
Dear all, I am trying to better understand how the precision matrix Q is calculated in the barrier
Jul 20
Marc
, …
Helpdesk (Haavard Rue)
7
Jul 19
Introducing a Constraint in the Leroux (besagproper2) Random Effects Model
Thank you very much, Haavard! We will test the code and let you know if it worked for us. Best
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Introducing a Constraint in the Leroux (besagproper2) Random Effects Model
Thank you very much, Haavard! We will test the code and let you know if it worked for us. Best
Jul 19
Aria
, …
Denis Rustand
4
Jul 18
fitted value for zeroinflatedpoisson0 family
Hi Aria, You can just skip the estimation of p as it seems useless in your case, it looks like you
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fitted value for zeroinflatedpoisson0 family
Hi Aria, You can just skip the estimation of p as it seems useless in your case, it looks like you
Jul 18
Nicholas Arisco
,
Helpdesk (Haavard Rue)
4
Jul 17
Issue specifying link for prediction -- nbinomial distributional assumption
Thank you, Havard, this is very helpful. You have successfully fixed my issue! On Wed, Jul 17, 2024
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Issue specifying link for prediction -- nbinomial distributional assumption
Thank you, Havard, this is very helpful. You have successfully fixed my issue! On Wed, Jul 17, 2024
Jul 17
Alexander Jack
,
Helpdesk (Haavard Rue)
4
Jul 17
Computing Marginal Probability of Fixed Effect Over Time
the concept will work for essentially anything. if you have a covariate x and want to check its
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Computing Marginal Probability of Fixed Effect Over Time
the concept will work for essentially anything. if you have a covariate x and want to check its
Jul 17
Zirou Zhou
,
Helpdesk (Haavard Rue)
2
Jul 17
Simulation from the iid4d hyperparameters
A better implementation is 'iidkd', where you set k=4. see inla.doc("iidkd") and
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Simulation from the iid4d hyperparameters
A better implementation is 'iidkd', where you set k=4. see inla.doc("iidkd") and
Jul 17
TheCorinna1994
,
Finn Lindgren
3
Jul 16
combined analysis of point-level and area-level data
Dear Finn, thanks for the answer. I will have a look at the paper! Have a nice holiday, Corinna On
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combined analysis of point-level and area-level data
Dear Finn, thanks for the answer. I will have a look at the paper! Have a nice holiday, Corinna On
Jul 16
Aria
, …
Janet Van Niekerk
4
Jul 15
Error: For survival models, then the reponse has to be of class `inla.surv'; you have `list'
Hi Finn, thank you for your reply. On Friday, July 12, 2024 at 5:10:15 PM UTC-4 Finn Lindgren wrote:
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Error: For survival models, then the reponse has to be of class `inla.surv'; you have `list'
Hi Finn, thank you for your reply. On Friday, July 12, 2024 at 5:10:15 PM UTC-4 Finn Lindgren wrote:
Jul 15
mahsa nadifar
,
Helpdesk (Haavard Rue)
6
Jul 14
Issues with Precision Parameters Using INLA for Bivariate Spatial Poisson Regression with Shared Component
I take this thread off the list as its getting to spesific On Sun, 2024-07-14 at 00:50 -0700, mahsa
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Issues with Precision Parameters Using INLA for Bivariate Spatial Poisson Regression with Shared Component
I take this thread off the list as its getting to spesific On Sun, 2024-07-14 at 00:50 -0700, mahsa
Jul 14
Ismael Ahmad Rab
,
Håvard Rue
2
Jul 13
Marginal log-Likelihood
the log-likelihood is compute as the log of the normalization constant as described in the INLA 2009
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Marginal log-Likelihood
the log-likelihood is compute as the log of the normalization constant as described in the INLA 2009
Jul 13
Aria
,
Helpdesk (Haavard Rue)
3
Jul 11
Error when adding splines to different models
Thank you very much for your help! On Thursday, July 11, 2024 at 5:57:41 AM UTC-4 Helpdesk (Haavard
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Error when adding splines to different models
Thank you very much for your help! On Thursday, July 11, 2024 at 5:57:41 AM UTC-4 Helpdesk (Haavard
Jul 11
Nilu
,
INLA help
2
Jul 11
Using INLA in secure systems
And the secure system runs what OS system? — Haavard Rue Helpdesk he...@r-inla.org On 11 Jul 2024 at
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Using INLA in secure systems
And the secure system runs what OS system? — Haavard Rue Helpdesk he...@r-inla.org On 11 Jul 2024 at
Jul 11
Abi Riley
,
Helpdesk (Haavard Rue)
2
Jul 11
PARDISO for INLA on HPC
If you run on a cluster, with a login-node, but then the job can be run on another node, the current
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PARDISO for INLA on HPC
If you run on a cluster, with a login-node, but then the job can be run on another node, the current
Jul 11
mike.bl...@gmail.com
, …
Abi Riley
10
Jul 10
SPDE overfitting?
Dear Thierry I know this post has been dormant for awhile, but I'm having a similar issue. I'
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SPDE overfitting?
Dear Thierry I know this post has been dormant for awhile, but I'm having a similar issue. I'
Jul 10
Martin Lotto Batista
, …
Håvard Rue
4
Jul 7
Never ending convergence issue
I guess you install the proper binary for the HPC, using inla.binary.install() ? you can try adding
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Never ending convergence issue
I guess you install the proper binary for the HPC, using inla.binary.install() ? you can try adding
Jul 7
shuqi wu
Jul 5
INLA Error: spde.prefix=NULL Required for SPDE Model
Hello, I am working on a spatial analysis using the INLA package in R and have encountered a
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INLA Error: spde.prefix=NULL Required for SPDE Model
Hello, I am working on a spatial analysis using the INLA package in R and have encountered a
Jul 5