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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to help@r-inla.org. You are of'course free to comment on questions from others as well.

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Daniel Borges, Finn Lindgren7

2:46 AM

Doubt about inla.spde2.pcmatern and inla.spde2.matern

Hi, No, you don't need kappa; each SPDE model object has its own parameterisation, so the one

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Doubt about inla.spde2.pcmatern and inla.spde2.matern

Hi, No, you don't need kappa; each SPDE model object has its own parameterisation, so the one

2:46 AM

Dominique Soudant, … Havard Rue4

Sep 19

Warning messages sent to terminal

Hi, Thank you very much for your answers. I've moved on to other tasks, but I'll come back to

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Warning messages sent to terminal

Hi, Thank you very much for your answers. I've moved on to other tasks, but I'll come back to

Sep 19

Jamie, … INLA help8

Sep 16

INLA nested hierarchical model translation

Upgrade to the newest testing version -- Håvard Rue hr...@r-inla.org On 16 Sep 2024 at 16:18 +0300,

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INLA nested hierarchical model translation

Upgrade to the newest testing version -- Håvard Rue hr...@r-inla.org On 16 Sep 2024 at 16:18 +0300,

Sep 16

Brian, … Helpdesk (Haavard Rue)10

Sep 16

Sampling from the posterior distribution in INLA

Dear Havard, Based on the above explanation, I followed the method outlined below to obtain the mean

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Sampling from the posterior distribution in INLA

Dear Havard, Based on the above explanation, I followed the method outlined below to obtain the mean

Sep 16

Thierry Onkelinx, Helpdesk (Haavard Rue)2

Sep 12

linking covariates to posterior samples from an INLA object

looks fine. maybe change "APred" to "^APred" in case there is another component

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linking covariates to posterior samples from an INLA object

looks fine. maybe change "APred" to "^APred" in case there is another component

Sep 12

Brian Tavernia, Finn Lindgren3

Sep 12

Replicated Spatial-Temporal Correlation – inlabru

Thanks, Finn. On Tuesday, September 10, 2024 at 2:57:51 PM UTC-6 Finn Lindgren wrote: Hi, The basic

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Replicated Spatial-Temporal Correlation – inlabru

Thanks, Finn. On Tuesday, September 10, 2024 at 2:57:51 PM UTC-6 Finn Lindgren wrote: Hi, The basic

Sep 12

Virginia Morera Pujol, Finn Lindgren9

Sep 12

fm_int samplers and weight correct usage

Hi, personally, when I'm not specifically speaking about the implementation details, I would

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fm_int samplers and weight correct usage

Hi, personally, when I'm not specifically speaking about the implementation details, I would

Sep 12

Sep 12

INLA install fail

Hello, I'm having an error when trying to install INLA. I had it previously installed but had to

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INLA install fail

Hello, I'm having an error when trying to install INLA. I had it previously installed but had to

Sep 12

Jeroen, … Håvard Rue4

Sep 5

Ecometric model with spatial information

with size of graph = n, then the n first lines in the bym2 output is normally what you want, which is

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Ecometric model with spatial information

with size of graph = n, then the n first lines in the bym2 output is normally what you want, which is

Sep 5

Bernardo D'Agostino, Helpdesk (Haavard Rue)2

Sep 4

Are there alternatives to PARDISO by panua

using PARDISO for a cluster you'll need a such license (about 1000$ a year I think, but check

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Are there alternatives to PARDISO by panua

using PARDISO for a cluster you'll need a such license (about 1000$ a year I think, but check

Sep 4

Sam Becker, Gregor Gorjanc2

Sep 4

Download AnimalINLA

Sam, It probably is not maintained anymore. If you're interested in pedigree based model you can

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Download AnimalINLA

Sam, It probably is not maintained anymore. If you're interested in pedigree based model you can

Sep 4

Keith Abrams, Denis Rustand5

Sep 3

INLAjoint - sharing a frailty with longitudinal mixed model

Hi Keith, If I understand you want to share the random intercept from the biomarker in the survival

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INLAjoint - sharing a frailty with longitudinal mixed model

Hi Keith, If I understand you want to share the random intercept from the biomarker in the survival

Sep 3

Ebenezer Ogunsakin, Aditya L. Ramadona2

Sep 3

Hi, There is an explanation on how to obtain the graph for other places in Chapter 6 of the same book

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Hi, There is an explanation on how to obtain the graph for other places in Chapter 6 of the same book

Sep 3

Zirou Zhou, Helpdesk (Haavard Rue)2

Sep 2

Different type of distribution results in different log-likelihood

doing log-normal regression with proportion data could give different results compared to beta-

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Different type of distribution results in different log-likelihood

doing log-normal regression with proportion data could give different results compared to beta-

Sep 2

KB, Finn Lindgren7

Aug 31

Error using inla.over_sp_mesh

Thanks! It worked when I assigned the crs with the fmesher. I previously did not know about fmesher,

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Error using inla.over_sp_mesh

Thanks! It worked when I assigned the crs with the fmesher. I previously did not know about fmesher,

Aug 31

Gregor Gorjanc, Håvard Rue4

Aug 29

Error in install.packages : type == "both" can only be used on Windows or a CRAN build for macOS

there are still issues, my bad... On Thu, 2024-08-29 at 21:30 +0300, Håvard Rue wrote: > >

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Error in install.packages : type == "both" can only be used on Windows or a CRAN build for macOS

there are still issues, my bad... On Thu, 2024-08-29 at 21:30 +0300, Håvard Rue wrote: > >

Aug 29

Daniel Borges, David Bolin2

Aug 29

Question about excursion package with INLA

Hi Daniel, I have never seen that error before, but it indeed looks like a memory problem. It is

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Question about excursion package with INLA

Hi Daniel, I have never seen that error before, but it indeed looks like a memory problem. It is

Aug 29

Aug 29

Hi INLA users, I wanted to verify that the order of locations in the INLA graph matches the order of

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Hi INLA users, I wanted to verify that the order of locations in the INLA graph matches the order of

Aug 29

Jeanne Ndiaye, Finn Lindgren2

Aug 28

Issue with mesh construction

Hi, THE inla version is mostly irrelevant for this, as it just calls the fmesher fm_mesh_2d_inla()

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Issue with mesh construction

Hi, THE inla version is mostly irrelevant for this, as it just calls the fmesher fm_mesh_2d_inla()

Aug 28

Stanley Sayianka, Helpdesk (Haavard Rue)4

Aug 28

sampling from the posterior of a fitted student-t regression model

Thank you, that answers it. I had forgotten the: sqrt(df/(df-2). On Tuesday, August 27, 2024 at 11:44

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sampling from the posterior of a fitted student-t regression model

Thank you, that answers it. I had forgotten the: sqrt(df/(df-2). On Tuesday, August 27, 2024 at 11:44

Aug 28

Wubet Worku, Helpdesk (Haavard Rue)2

Aug 27

Mediation analysis

INLA-SPDE SPATIAL MODELLING AND BAYESIAN MEDIATION ANALYSIS: INSIGHTS, ADVANCES AND APPLICATIONS

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Mediation analysis

INLA-SPDE SPATIAL MODELLING AND BAYESIAN MEDIATION ANALYSIS: INSIGHTS, ADVANCES AND APPLICATIONS

Aug 27

Daniel Borges, Finn Lindgren5

Aug 26

Significance Spatial Effect

Thank you Dr Finn On Wednesday, August 21, 2024 at 5:19:59 AM UTC-5 Finn Lindgren wrote: Hi, I think

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Significance Spatial Effect

Thank you Dr Finn On Wednesday, August 21, 2024 at 5:19:59 AM UTC-5 Finn Lindgren wrote: Hi, I think

Aug 26

Wubet Worku, Helpdesk (Haavard Rue)2

Aug 24

the error msg uses C-indexiing which starts at 0, so check row 5702 On Sat, 2024-08-24 at 19:56 +1000

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the error msg uses C-indexiing which starts at 0, so check row 5702 On Sat, 2024-08-24 at 19:56 +1000

Aug 24

Tim Meehan, Finn Lindgren3

Aug 23

Residual spatial fields

Thanks, Finn! On Thu, Aug 22, 2024, 11:45 AM Finn Lindgren <finn.l...@gmail.com> wrote: Hi

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Residual spatial fields

Thanks, Finn! On Thu, Aug 22, 2024, 11:45 AM Finn Lindgren <finn.l...@gmail.com> wrote: Hi

Aug 23

Aug 22

Random effects not behaving as expected

Hello, I hope you are well. I am trying to run the following model to model dengue, but I am not

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Random effects not behaving as expected

Hello, I hope you are well. I am trying to run the following model to model dengue, but I am not

Aug 22

Zirou Zhou, … Havard Rue14

Aug 21

Using Hieratical model for beta precision parameters

Thank you for help. I changed the iid4d to iidkd. Then the inla got error like *** Warning ***

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Using Hieratical model for beta precision parameters

Thank you for help. I changed the iid4d to iidkd. Then the inla got error like *** Warning ***

Aug 21

Brian, … Helpdesk (Haavard Rue)16

Aug 21

Mixed effect models in INLA

you probably need an inteformative prior for that precision On Wed, 2024-08-21 at 01:48 -0700, Brian

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Mixed effect models in INLA

you probably need an inteformative prior for that precision On Wed, 2024-08-21 at 01:48 -0700, Brian

Aug 21

TheCorinna1994, Helpdesk (Haavard Rue)5

Aug 21

triple interaction random effects

Thanks a lot! On Thursday, 15 August 2024 at 11:10:26 UTC+2 Helpdesk (Haavard Rue) wrote: you can

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triple interaction random effects

Thanks a lot! On Thursday, 15 August 2024 at 11:10:26 UTC+2 Helpdesk (Haavard Rue) wrote: you can

Aug 21

Alberto Fameli, INLA help3

Aug 20

Error occured in the GSL-Library

Please upgrade to R 4.4 and retry with the most recent version of INLA — Haavard Rue Helpdesk help@r-

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Error occured in the GSL-Library

Please upgrade to R 4.4 and retry with the most recent version of INLA — Haavard Rue Helpdesk help@r-

Aug 20

Ruby Ji, Helpdesk (Haavard Rue)3

Aug 19

Copy feature beta to beta_season

Thank you for the advice. I'm not sure how to set beta.1 to 1 if it's season 1 and NA if

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Copy feature beta to beta_season

Thank you for the advice. I'm not sure how to set beta.1 to 1 if it's season 1 and NA if

Aug 19

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