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R-inla discussion group

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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to help@r-inla.org. You are of'course free to comment on questions from others as well.

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Prince Michael Amegbor, Helpdesk (Haavard Rue)4

11:54 AM

Error in inlabru: INLA program failed for binomial + SPDE model

can you upgrade to the most recent testing version of INLA, and the most recent one of inlabru, and

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Error in inlabru: INLA program failed for binomial + SPDE model

can you upgrade to the most recent testing version of INLA, and the most recent one of inlabru, and

11:54 AM

Nidayatou Ayeva, INLA help4

6:40 AM

Non-linear effects in ecological Poisson regression using RW2 splines in INLA

Seems correct. I don't know if this is written specifically anywhere, but it's kind of

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Non-linear effects in ecological Poisson regression using RW2 splines in INLA

Seems correct. I don't know if this is written specifically anywhere, but it's kind of

6:40 AM

Michael Pegg, Helpdesk (Haavard Rue)3

Sep 18

ERROR: Binary package failed

I figured it out. I just had to update my RTools with the correct R version! On Thursday, September

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ERROR: Binary package failed

I figured it out. I just had to update my RTools with the correct R version! On Thursday, September

Sep 18

Ufuoma Ovienmhada, … Xinying Fang3

Sep 16

MacOS, R4.5 Error in inla.call.builtin() : INLA installation error; no such file

I have the same problem. Let me know if it is not appropriate to respond in others' post. My R

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MacOS, R4.5 Error in inla.call.builtin() : INLA installation error; no such file

I have the same problem. Let me know if it is not appropriate to respond in others' post. My R

Sep 16

Jared Palazza, Helpdesk (Haavard Rue)3

Sep 14

INLA: simple slopes from interaction (BYM2 logistic) — lincomb/cov.fixed/sampling all failing

For this, you would need to add the config=TRUE when you fit the model, as its tell inla() to store

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INLA: simple slopes from interaction (BYM2 logistic) — lincomb/cov.fixed/sampling all failing

For this, you would need to add the config=TRUE when you fit the model, as its tell inla() to store

Sep 14

Ji Gna, Finn Lindgren2

Sep 9

Issues installing INLA + fmesher on HPC (Ginsburg)

Hi, the proper solution I think is to work with your system administrators to install the missing

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Issues installing INLA + fmesher on HPC (Ginsburg)

Hi, the proper solution I think is to work with your system administrators to install the missing

Sep 9

Bamidele Toba, Finn Lindgren5

Sep 9

Transforming R-INLA code to Inlabru

Hi, Your component definition is lacking a "covariates" item; perhaps that's the source

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Transforming R-INLA code to Inlabru

Hi, Your component definition is lacking a "covariates" item; perhaps that's the source

Sep 9

Alexandra Strang, … Finn Lindgren4

Sep 9

Fitting LGCP model to penguin point locations

Hi Alexandra, the implementation of DIC and WAIC in R-INLA isn't well defined for how the point

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Fitting LGCP model to penguin point locations

Hi Alexandra, the implementation of DIC and WAIC in R-INLA isn't well defined for how the point

Sep 9

Abi Riley, INLA help2

Sep 8

INLA Posterior Sample

Any chance of getting a copy of data and code so I could rerun it here to figure out why? — Haavard

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INLA Posterior Sample

Any chance of getting a copy of data and code so I could rerun it here to figure out why? — Haavard

Sep 8

Raisa Rashid, … Helpdesk (Haavard Rue)3

Sep 7

Random effect logistic model prior specification problem

I would recommend using 'rprior' instead of 'expression:', its just easier inla.doc(

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Random effect logistic model prior specification problem

I would recommend using 'rprior' instead of 'expression:', its just easier inla.doc(

Sep 7

Brian, INLA help7

Sep 6

VB correction divergence warnings in spatial binomial model - should I be concerned?

The warnings do stop after a few iterations and the model fit successfully. Thank you for the

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VB correction divergence warnings in spatial binomial model - should I be concerned?

The warnings do stop after a few iterations and the model fit successfully. Thank you for the

Sep 6

Virginia Morera Pujol, Finn Lindgren3

Sep 6

problem fitting rw2 covariates: logical subscript too long

Oh, I didn't realise the covariates were available from there. In any case, that was not the

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problem fitting rw2 covariates: logical subscript too long

Oh, I didn't realise the covariates were available from there. In any case, that was not the

Sep 6

Esmail Abdul Fattah

Sep 4

Contribute Your Work to the New INLA Website!

Dear INLA community, We are excited to share that a new INLA website is under development, with a

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Contribute Your Work to the New INLA Website!

Dear INLA community, We are excited to share that a new INLA website is under development, with a

Sep 4

Berin, Håvard Rue2

Sep 4

(Beginner question) Consequences of applying model with spatial correlation despite no improvement in DIC/WAIC.

nothing wrong using this model as long as you make the assumptions clear. like, that the spatial

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(Beginner question) Consequences of applying model with spatial correlation despite no improvement in DIC/WAIC.

nothing wrong using this model as long as you make the assumptions clear. like, that the spatial

Sep 4

Berin, Håvard Rue2

Sep 4

(Beginner question) Minimum no. sites to fit a Bernoulli GLM with spatial correlation

Never heared of that rule of thumb, but of course, the information you have in the data about

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(Beginner question) Minimum no. sites to fit a Bernoulli GLM with spatial correlation

Never heared of that rule of thumb, but of course, the information you have in the data about

Sep 4

Ji Gna, … Havard Rue5

Aug 22

INLA + fmesher Installation Failure on HPC Cluster (R 4.4 / 4.5, Conda & Singularity Tried)

Use R 4.5. And the most recent testing version After installing, install new binaries with inla.

unread,

INLA + fmesher Installation Failure on HPC Cluster (R 4.4 / 4.5, Conda & Singularity Tried)

Use R 4.5. And the most recent testing version After installing, install new binaries with inla.

Aug 22

Borizook, Finn Lindgren5

Aug 21

Linking predicted value from y2 into a downstream model y3

I'll assume a model of the form eta1 = beta1 * covar1 + field eta2 = beta2 * covar2 + field eta3

unread,

Linking predicted value from y2 into a downstream model y3

I'll assume a model of the form eta1 = beta1 * covar1 + field eta2 = beta2 * covar2 + field eta3

Aug 21

Jeffrey Wu, … Helpdesk (Haavard Rue)3

Aug 20

Separable covariance/precision matrix

you may consider 'dmatern' (since you have few locations) which can be combined with AR1 or

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Separable covariance/precision matrix

you may consider 'dmatern' (since you have few locations) which can be combined with AR1 or

Aug 20

yasaman shahhoseni, INLA help2

Aug 19

The inla program failed and the maximum number of tries has been reached.

Could you share so we can rerun it here to check? — Haavard Rue HelpDesk help@r-inla. org On 19 Aug

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The inla program failed and the maximum number of tries has been reached.

Could you share so we can rerun it here to check? — Haavard Rue HelpDesk help@r-inla. org On 19 Aug

Aug 19

rmip...@gmail.com, Helpdesk (Haavard Rue)8

Aug 16

Any experience with getting INLA to work on Posit Cloud?

CentOS7 builds are added to the most recent stable and testing version (which is reported to work

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Any experience with getting INLA to work on Posit Cloud?

CentOS7 builds are added to the most recent stable and testing version (which is reported to work

Aug 16

GLORIA NKEM IBEH, … Helpdesk (Haavard Rue)4

Aug 15

About plotting exceedance probability from a spatio-temporal model

Note that the value of 'E' is not part of the fitted.values (its a part of the likelihood...)

unread,

About plotting exceedance probability from a spatio-temporal model

Note that the value of 'E' is not part of the fitted.values (its a part of the likelihood...)

Aug 15

Leonardo Cefalo, Håvard Rue10

Aug 11

Implausible posterior correlations with multivariate BYM2

Done; I removed the group temporarily in order due to thread length Best, LC Il Lun 11 Ago 2025, 21:

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Implausible posterior correlations with multivariate BYM2

Done; I removed the group temporarily in order due to thread length Best, LC Il Lun 11 Ago 2025, 21:

Aug 11

Brian, Finn Lindgren7

Aug 5

INLA and inlabru model comparison

Yes. If set the same tolerance option for bru(), the range is still different if I don't use

unread,

INLA and inlabru model comparison

Yes. If set the same tolerance option for bru(), the range is still different if I don't use

Aug 5

Julia Quero Pérez, Helpdesk (Haavard Rue)3

Aug 5

About inla.posterior.sample and AR1 models

Hello, The thing is that I don't only want one prediction, I want to do simulations, so I'll

unread,

About inla.posterior.sample and AR1 models

Hello, The thing is that I don't only want one prediction, I want to do simulations, so I'll

Aug 5

Jul 29

variable lengths differ (found for 'age')

Dear INLA support group, I am running a geostatistical model for point referenced data using

unread,

variable lengths differ (found for 'age')

Dear INLA support group, I am running a geostatistical model for point referenced data using

Jul 29

Barry Thierno Souleymane, Håvard Rue5

Jul 24

INLA crash when fitting the Mathematical model

Okay, thank you Dr. Barry Thierno Souleymane (Ph.D) Statisticien/Démographe Consultant Tel:

unread,

INLA crash when fitting the Mathematical model

Okay, thank you Dr. Barry Thierno Souleymane (Ph.D) Statisticien/Démographe Consultant Tel:

Jul 24

Lola Riesgo Torres, Helpdesk (Haavard Rue)2

Jul 24

Do probabilities obtained with GAM-INLA need to be calibrated?

there is no guarantee that predictive probabilities are well calibrated, unless you're using the

unread,

Do probabilities obtained with GAM-INLA need to be calibrated?

there is no guarantee that predictive probabilities are well calibrated, unless you're using the

Jul 24

Dominique Soudant, … Finn Lindgren5

Jul 24

Different results on two computers

Hi, I ran inla.upgrade() => glibC issue I ran inla.binary.install() no more glibC issue and get my

unread,

Different results on two computers

Hi, I ran inla.upgrade() => glibC issue I ran inla.binary.install() no more glibC issue and get my

Jul 24

Jin Hyung Lee, INLA help3

Jul 23

INLA installation on Windows

Dear Dr.Rue After uninstalling and reinstalling the latest R, it is working well on my Windows. Thank

unread,

INLA installation on Windows

Dear Dr.Rue After uninstalling and reinstalling the latest R, it is working well on my Windows. Thank

Jul 23

Rekha Mohan, Finn Lindgren15

Jul 21

Advice on how to proceed when SPDE+covariate gives unrealistic values

Hello, Nope, my values for the SPDE are very normal now. What I changed was instead of exp(mySmooth +

unread,

Advice on how to proceed when SPDE+covariate gives unrealistic values

Hello, Nope, my values for the SPDE are very normal now. What I changed was instead of exp(mySmooth +

Jul 21

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