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R-inla discussion group

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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to help@r-inla.org. You are of'course free to comment on questions from others as well.

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Virginia Morera Pujol, … Denis Rustand5

1:09 AM

The inla result collection failed

Hi, This could deserve a separate thread as it's likely a different issue. The code runs fine for

unread,

The inla result collection failed

Hi, This could deserve a separate thread as it's likely a different issue. The code runs fine for

1:09 AM

May 14

INLA Failure: Issues with a single covaraite?

Hi all, I am running a zinb-glmm and a zinb-spde-glmm in inla for a project on ticks. I have

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INLA Failure: Issues with a single covaraite?

Hi all, I am running a zinb-glmm and a zinb-spde-glmm in inla for a project on ticks. I have

May 14

Nafsika Antoniadou

May 14

Hello, I have the model: form13 = y ~ -1 + intercept + temp + f(idx, model="dmatern",

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Hello, I have the model: form13 = y ~ -1 + intercept + temp + f(idx, model="dmatern",

May 14

Guido Fioravanti, Håvard Rue2

May 12

Question about Interpretation of Validation Metrics from inla.group.cv

In general, there is no answer what is the 'best' one, as this is defined by what you chose

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Question about Interpretation of Validation Metrics from inla.group.cv

In general, there is no answer what is the 'best' one, as this is defined by what you chose

May 12

Charlotte Taelman, … Håvard Rue4

May 12

Log-transformation needed for predictions by negative-binomial model?

Hi only the linear predictor in the negative binomial part, is there in 'fitted.values'. this

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Log-transformation needed for predictions by negative-binomial model?

Hi only the linear predictor in the negative binomial part, is there in 'fitted.values'. this

May 12

Samuel Reiterbund-Olley, … Virgilio Gómez-Rubio9

May 12

Hierarchal SLM model in INLA?

Hi Virgilio, I tried the SLM function with the new coding for region, but still threw off a similar

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Hierarchal SLM model in INLA?

Hi Virgilio, I tried the SLM function with the new coding for region, but still threw off a similar

May 12

Alokesh Manna, Håvard Rue4

May 9

Reproducibility and fluctuation of the INLA estimates

Thanks, Professor Rue! On Wednesday, May 7, 2025 at 3:36:33 AM UTC-4 Håvard Rue wrote: On Wed, 2025-

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Reproducibility and fluctuation of the INLA estimates

Thanks, Professor Rue! On Wednesday, May 7, 2025 at 3:36:33 AM UTC-4 Håvard Rue wrote: On Wed, 2025-

May 9

May 9

Orthogonal matrices-time component

Hi all, I was recently discussing an issue with a colleague regarding my INLA modeling, where I'm

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Orthogonal matrices-time component

Hi all, I was recently discussing an issue with a colleague regarding my INLA modeling, where I'm

May 9

Felipe Barletta, Helpdesk (Haavard Rue)2

May 9

Defining Two Offsets in a Joint Poisson Model with INLA

you can define the offset in various ways, which can also be combined. with the poisson, there is a

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Defining Two Offsets in a Joint Poisson Model with INLA

you can define the offset in various ways, which can also be combined. with the poisson, there is a

May 9

Felipe Barletta, Elias T. Krainski4

May 7

SPDE model to predict air pollutant

Muito Obrigado Elias. It's perfect. I still have difficulty understanding how to define the mesh.

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SPDE model to predict air pollutant

Muito Obrigado Elias. It's perfect. I still have difficulty understanding how to define the mesh.

May 7

GLORIA NKEM IBEH

May 7

Hi Please can you help me fix this error N <-6000 > burn.in <- 500 > thin <- 10 >

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Hi Please can you help me fix this error N <-6000 > burn.in <- 500 > thin <- 10 >

May 7

Alokesh Manna, Håvard Rue3

May 6

variability/Reliability of INLA spatial estimates

Thanks professor Rue! What I observed is that for the same data if I run my model 3 times, there is a

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variability/Reliability of INLA spatial estimates

Thanks professor Rue! What I observed is that for the same data if I run my model 3 times, there is a

May 6

Scott Foster, … Helpdesk (Haavard Rue)3

May 6

multiple likelihoods with (partial) common parameters

this is an example On Sun, 2025-05-04 at 21:11 -0700, Scott Foster wrote: > Dear INLA experts,

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multiple likelihoods with (partial) common parameters

this is an example On Sun, 2025-05-04 at 21:11 -0700, Scott Foster wrote: > Dear INLA experts,

May 6

Gregor Gorjanc, … Alexandre de Bustamante Simas12

May 5

Help with MacOS install on R4.5

It now works on my end - see below - thanks! > R.version _ platform aarch64-apple-darwin20 arch

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Help with MacOS install on R4.5

It now works on my end - see below - thanks! > R.version _ platform aarch64-apple-darwin20 arch

May 5

Nafsika Antoniadou, Helpdesk (Haavard Rue)2

May 3

ERROR: matrix is not positive definite

coud you please upgrade to R-4.5 and retry with the most recent testing version of INLA? On Wed, 2025

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ERROR: matrix is not positive definite

coud you please upgrade to R-4.5 and retry with the most recent testing version of INLA? On Wed, 2025

May 3

Helpdesk (Haavard Rue)

Apr 29

Changes in new build

A new testing version is out now, which is built with R-4.5 For Linux, the binaries are buildt on

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Changes in new build

A new testing version is out now, which is built with R-4.5 For Linux, the binaries are buildt on

Apr 29

Esmail Abdul Fattah

Apr 29

Help Us Improve R-INLA – Please Fill Out Our Questionnaire

Dear INLA Enthusiasts, In preparation for the upcoming INLA workshop at the end of May, we kindly

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Help Us Improve R-INLA – Please Fill Out Our Questionnaire

Dear INLA Enthusiasts, In preparation for the upcoming INLA workshop at the end of May, we kindly

Apr 29

high...@highstat.com

Apr 29

Live online statistics course: Introduction to GLM with spatial, and spatial-temporal correlation using R-INLA

Got an empty diary next week? Fill it with some spatial stats! Introduction to GLM with spatial, and

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Live online statistics course: Introduction to GLM with spatial, and spatial-temporal correlation using R-INLA

Got an empty diary next week? Fill it with some spatial stats! Introduction to GLM with spatial, and

Apr 29

Samuel Molano, … Helpdesk (Haavard Rue)5

Apr 28

Using INLA for predicting a binary variable

doing a plug-in is almost correct, but we do the proper integration, like p.mean = E ( 1/ (1 + exp(-

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Using INLA for predicting a binary variable

doing a plug-in is almost correct, but we do the proper integration, like p.mean = E ( 1/ (1 + exp(-

Apr 28

Dominique Soudant, … Finn Lindgren11

Apr 28

[DLM with INLA] Interventions

Hi, it wasn't clear to me in the earlier discussion that you were looking for a temporal mean-

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[DLM with INLA] Interventions

Hi, it wasn't clear to me in the earlier discussion that you were looking for a temporal mean-

Apr 28

GLORIA NKEM IBEH, INLA help2

Apr 25

I think you need to provide more information. Can you rerun with option verbose=TRUE and share the

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I think you need to provide more information. Can you rerun with option verbose=TRUE and share the

Apr 25

TheCorinna1994, Håvard Rue2

Apr 24

INLA for Red Hat Linux

you can try this test model inla(y~1,data=data.frame(y=0),verbose=TRUE) if that does not 'work

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INLA for Red Hat Linux

you can try this test model inla(y~1,data=data.frame(y=0),verbose=TRUE) if that does not 'work

Apr 24

Michael Pegg, Helpdesk (Haavard Rue)2

Apr 23

What does my summary.hyperpar tell me?

The summaries are computed for the marginal posterior to the parameter, or hyperparameter in this

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What does my summary.hyperpar tell me?

The summaries are computed for the marginal posterior to the parameter, or hyperparameter in this

Apr 23

Helpdesk (Haavard Rue)2

Apr 19

Re: [r-inla] accounting for low detectability observations

if you're on river networks, then using the https://davidbolin.github.io/MetricGraph/ would be

unread,

Re: [r-inla] accounting for low detectability observations

if you're on river networks, then using the https://davidbolin.github.io/MetricGraph/ would be

Apr 19

Helpdesk (Haavard Rue)

Apr 16

Hi R version 4.5.0 (How About a Twenty-Six) has been released on 2025-04-11, but we are not yet

unread,

Hi R version 4.5.0 (How About a Twenty-Six) has been released on 2025-04-11, but we are not yet

Apr 16

Nafsika Antoniadou, Helpdesk (Haavard Rue)2

Apr 14

Smoothness parameter in dmatern

the parameter is by default fixed, but you can set fixed=FALSE, and it will be estimated. Alternative

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Smoothness parameter in dmatern

the parameter is by default fixed, but you can set fixed=FALSE, and it will be estimated. Alternative

Apr 14

jixin Gong, Håvard Rue3

Apr 14

Request for build.package to Modify INLA Package

you can download hrue.r-inla-download.org/build64.tgz which is what I use for one of the Ubuntu2204

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Request for build.package to Modify INLA Package

you can download hrue.r-inla-download.org/build64.tgz which is what I use for one of the Ubuntu2204

Apr 14

Moritz Klaassen, Finn Lindgren3

Apr 11

How to handle IPS and sampler polygons when presence-only and presence-absence data have different spatial extents?

Hi Finn, Thank you so much for your detailed explanation and suggestions! I only started exploring

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How to handle IPS and sampler polygons when presence-only and presence-absence data have different spatial extents?

Hi Finn, Thank you so much for your detailed explanation and suggestions! I only started exploring

Apr 11

JUAN MIGUEL REQUENA MULLOR, Finn Lindgren4

Apr 11

"Error in as.character(package)" when running inla.barrier.pcmatern().

Confirmed; requireNamespace() needs a string with the package name: > requireNamespace(methods)

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"Error in as.character(package)" when running inla.barrier.pcmatern().

Confirmed; requireNamespace() needs a string with the package name: > requireNamespace(methods)

Apr 11

TheCorinna1994, … Finn Lindgren4

Apr 10

The inla result collection failed.

Ok great thanks that worked out. Since I need to run few big spde models, already implemented in INLA

unread,

The inla result collection failed.

Ok great thanks that worked out. Since I need to run few big spde models, already implemented in INLA

Apr 10

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