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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to
help@r-inla.org
. You are of'course free to comment on questions from others as well.
Best,
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Palo
, …
Helpdesk (Haavard Rue)
7
Feb 15
Fitting spatial model with two SPDEs
currently, there is no automatic way of doing this On Thu, 2025-02-13 at 18:28 -0800, lyh...@gmail.
unread,
Fitting spatial model with two SPDEs
currently, there is no automatic way of doing this On Thu, 2025-02-13 at 18:28 -0800, lyh...@gmail.
Feb 15
Katie Tseng
,
INLA help
2
Feb 15
Does INLA allow Gamma priors for fixed effects?
You can bound regression coefficients using the 'clinear' model; see inla.doc(“clinear”) —
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Does INLA allow Gamma priors for fixed effects?
You can bound regression coefficients using the 'clinear' model; see inla.doc(“clinear”) —
Feb 15
Thierry Onkelinx
,
INLA help
3
Feb 14
INLA repo has a problem
Thanks for the update. ir. Thierry Onkelinx Statisticus / Statistician Vlaamse Overheid / Government
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INLA repo has a problem
Thanks for the update. ir. Thierry Onkelinx Statisticus / Statistician Vlaamse Overheid / Government
Feb 14
Ferdinand David Aritonang
,
Helpdesk (Haavard Rue)
2
Feb 14
Tweedie Hyperparamater
see also inla.doc("tweedie") here is an example library(tweedie) library(INLA) n <- 300
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Tweedie Hyperparamater
see also inla.doc("tweedie") here is an example library(tweedie) library(INLA) n <- 300
Feb 14
Greta Panunzi
,
Finn Lindgren
3
Feb 11
Random effect component
Another possible difference: "besag" in INLA is an ICAR(1) model, and you're also
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Random effect component
Another possible difference: "besag" in INLA is an ICAR(1) model, and you're also
Feb 11
ar1 model hyperpars
,
Finn Lindgren
2
Feb 11
latent hyperparameter group effects?
Calling it ”group” risks confusion with the ”group feature” of f() models, but i think you're
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latent hyperparameter group effects?
Calling it ”group” risks confusion with the ”group feature” of f() models, but i think you're
Feb 11
TheGorsisahib
,
Håvard Rue
3
Feb 11
Scaling Posterior means
thank you On Saturday, February 8, 2025 at 1:18:37 PM UTC+5 Håvard Rue wrote: you need to set the
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Scaling Posterior means
thank you On Saturday, February 8, 2025 at 1:18:37 PM UTC+5 Håvard Rue wrote: you need to set the
Feb 11
Louis Li
,
Helpdesk (Haavard Rue)
2
Feb 11
Help regarding INLA theories
On Mon, 2025-02-10 at 20:09 -0800, Louis Li wrote: > Dear INLA experts, > > I'm facing
unread,
Help regarding INLA theories
On Mon, 2025-02-10 at 20:09 -0800, Louis Li wrote: > Dear INLA experts, > > I'm facing
Feb 11
lyh...@gmail.com
, …
Virgilio Gómez-Rubio
3
Feb 10
Fitting model using inlabru
Hi, In addition, you can check this paper too: Gómez-Rubio, Virgilio, Roger S. Bivand, and Håvard Rue
unread,
Fitting model using inlabru
Hi, In addition, you can check this paper too: Gómez-Rubio, Virgilio, Roger S. Bivand, and Håvard Rue
Feb 10
Daniel Smith
,
Havard Rue
2
Feb 3
Quantile Regression on INLA
The asymmetrical Laplace was remove when we realized it's the wrong (Bayesian) thing to do.
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Quantile Regression on INLA
The asymmetrical Laplace was remove when we realized it's the wrong (Bayesian) thing to do.
Feb 3
Louis Li
,
Finn Lindgren
2
Jan 28
Seeking assistance with spatial modelling
Hi, Since inla model consist of latent Gaussian variables, they are fundamentally not limited to
unread,
Seeking assistance with spatial modelling
Hi, Since inla model consist of latent Gaussian variables, they are fundamentally not limited to
Jan 28
krtmc...@gmail.com
, …
Brian
9
Jan 25
How to interpret inla outputs that include categorical variables?
Thank you! On Friday, January 24, 2025 at 10:57:13 PM UTC+3 Helpdesk (Haavard Rue) wrote: On Fri,
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How to interpret inla outputs that include categorical variables?
Thank you! On Friday, January 24, 2025 at 10:57:13 PM UTC+3 Helpdesk (Haavard Rue) wrote: On Fri,
Jan 25
Charlotte Taelman
, …
Finn Lindgren
5
Jan 24
Convergence issues: The Newton-Raphson optimizer did not converge
Thank you very much! I will try out all of your advices. Kind regards, Charlotte Op za 21 dec 2024 om
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Convergence issues: The Newton-Raphson optimizer did not converge
Thank you very much! I will try out all of your advices. Kind regards, Charlotte Op za 21 dec 2024 om
Jan 24
Peter Thompson
, …
Finn Lindgren
6
Jan 21
Advice for limiting pseudo-replication when applying INLA framework to ecological data
Likely the easiest way to do this at the moment would be to fork the inlabru repository and make a
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Advice for limiting pseudo-replication when applying INLA framework to ecological data
Likely the easiest way to do this at the moment would be to fork the inlabru repository and make a
Jan 21
Rustam Mussa
, …
Helpdesk (Haavard Rue)
4
Jan 20
seasonal latent effects
for a NA observation, you need to set the argument 'link' to 'i' to say that this NA
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seasonal latent effects
for a NA observation, you need to set the argument 'link' to 'i' to say that this NA
Jan 20
Insang Song
, …
Håvard Rue
7
Jan 20
Long preparation time for custom Cmatrix for Leroux prior
Thank you for the response. I attached the example code and data. The code is supposed to work if
unread,
Long preparation time for custom Cmatrix for Leroux prior
Thank you for the response. I attached the example code and data. The code is supposed to work if
Jan 20
Angela Fanelli
Jan 17
Assistance Needed with Seasonality Modelling in INLA
Hello INLA Community, I am reaching out to seek assistance in properly framing a seasonality model
unread,
Assistance Needed with Seasonality Modelling in INLA
Hello INLA Community, I am reaching out to seek assistance in properly framing a seasonality model
Jan 17
Eirik Myrvoll-Nilsen
,
Helpdesk (Haavard Rue)
2
Jan 16
INLA sometimes stuck in infinite loop
try the testing version On Thu, 2025-01-16 at 07:45 -0800, Eirik Myrvoll-Nilsen wrote: > Hi, >
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INLA sometimes stuck in infinite loop
try the testing version On Thu, 2025-01-16 at 07:45 -0800, Eirik Myrvoll-Nilsen wrote: > Hi, >
Jan 16
Dominique Soudant
,
Finn Lindgren
3
Jan 16
What is mlik really equal to?
OK thank you very much Finn : "misleading terminology" is the issue, we cannot expect the
unread,
What is mlik really equal to?
OK thank you very much Finn : "misleading terminology" is the issue, we cannot expect the
Jan 16
Hana Fu
Jan 15
Making predictions for spatial model
Hi, I'm fitting a BYM2 model using the Poisson distribution. In the data, I have "SES"
unread,
Making predictions for spatial model
Hi, I'm fitting a BYM2 model using the Poisson distribution. In the data, I have "SES"
Jan 15
Alessia
,
Håvard Rue
2
Jan 15
Help with computational issues R-INLA
On Wed, 2025-01-15 at 01:26 -0800, Alessia wrote: > spatial.field.group can you check this
unread,
Help with computational issues R-INLA
On Wed, 2025-01-15 at 01:26 -0800, Alessia wrote: > spatial.field.group can you check this
Jan 15
LG
Jan 10
exponentiate beta estimates
Hi, I'm estimating HIV prevalence at the subdistrict level using a spatial conditional
unread,
exponentiate beta estimates
Hi, I'm estimating HIV prevalence at the subdistrict level using a spatial conditional
Jan 10
Helpdesk (Haavard Rue)
Jan 10
Re: [r-inla] spatio-temporal model for areal data
could you write down in more details what you want? On Thu, 2025-01-09 at 19:53 -0800, Claire Francis
unread,
Re: [r-inla] spatio-temporal model for areal data
could you write down in more details what you want? On Thu, 2025-01-09 at 19:53 -0800, Claire Francis
Jan 10
ylwishes
,
Helpdesk (Haavard Rue)
2
Jan 9
Query Regarding Bayesian Generalized Linear Mixed Effects Model with Spatiotemporal Covariance Structure Using INLA
from the output it seems like only two of the years has observed data, this is not much to estimate
unread,
Query Regarding Bayesian Generalized Linear Mixed Effects Model with Spatiotemporal Covariance Structure Using INLA
from the output it seems like only two of the years has observed data, this is not much to estimate
Jan 9
Louis Li
,
Håvard Rue
2
Jan 8
Differential Equations with INLA
it does not follow the assumption that data are conditionally independent and y_i only depends on \
unread,
Differential Equations with INLA
it does not follow the assumption that data are conditionally independent and y_i only depends on \
Jan 8
Yuchen Wang
, …
Helpdesk (Haavard Rue)
11
12/19/24
Error in inla.inlaprogram.has.crashed() and I cannot find whu
you can try to reduce the dimension or run it on a larger machine On Wed, 2024-12-18 at 17:56 -0800,
unread,
Error in inla.inlaprogram.has.crashed() and I cannot find whu
you can try to reduce the dimension or run it on a larger machine On Wed, 2024-12-18 at 17:56 -0800,
12/19/24
Finn Lindgren
,
Louis Li
4
12/18/24
Re: [r-inla] Determining covariate posteriors under fixed model
Thank you for your answer, it works now :) One last question though, the following likelihood works:
unread,
Re: [r-inla] Determining covariate posteriors under fixed model
Thank you for your answer, it works now :) One last question though, the following likelihood works:
12/18/24
廖芝瑜
,
Helpdesk (Haavard Rue)
2
12/14/24
Spatial modeling of areal data
I do not see any questions here. Anyway, the books at www.r-inla.org discuss these kind of models
unread,
Spatial modeling of areal data
I do not see any questions here. Anyway, the books at www.r-inla.org discuss these kind of models
12/14/24
Felipe Barletta
, …
Denis Rustand
7
12/13/24
Negative LCPO
Hi Felipe, To complete Finn's answer and in the specific context of your joint model, in order to
unread,
Negative LCPO
Hi Felipe, To complete Finn's answer and in the specific context of your joint model, in order to
12/13/24
Alokesh Manna
, …
Finn Lindgren
8
12/13/24
Can we manually create the stopping criteria of INLA?
Thank you! On Fri, Dec 13, 2024 at 7:34 PM Finn Lindgren <finn.l...@gmail.com> wrote: Just
unread,
Can we manually create the stopping criteria of INLA?
Thank you! On Fri, Dec 13, 2024 at 7:34 PM Finn Lindgren <finn.l...@gmail.com> wrote: Just
12/13/24