INLA Crashes around Index Table Entry

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Olanrewaju Lawal

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May 16, 2022, 2:42:19 AMMay 16
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Hi
I am running the prediction part of my model, the prediction is for the study area. The model was constructed successfully. The prediction keeps crashing, with no clear indication of what the error is. Her eis the code
p.res.pred<-inla(formula, data=inla.stack.data(stk.full,spde=spde),family= 'binomial',
                 Ntrials = n,
                 control.predictor=list(link = 1, A=inla.stack.A(stk.full),compute=TRUE),  
                 control.compute = list(dic = TRUE, config = FALSE),
                 verbose = TRUE)

Below is the output

Read ntt 4 1 with max.threads 8
    Found num.threads = 4:1 max_threads = 4

    file: src/inla.c  770fd3bf230ee6f56b07b40276712783a6ce895c - Sun Nov 21 18:53:10 2021 +0300
Report bugs to <he...@r-inla.org>
Set reordering to id=[0] and name=[default]
Process file[C:\Users\olala\AppData\Local\Temp\RtmpmoQIL8\file42d863176f35/Model.ini] threads[4] max.threads[8] blas_threads[1] nested[4:1]
inla_build...
    number of sections=[15]
    parse section=[0] name=[INLA.libR] type=[LIBR]
    inla_parse_libR...
        section[INLA.libR]
            R_HOME=[C:/PROGRA~1/R/R-40~1.3]
    parse section=[12] name=[INLA.Expert] type=[EXPERT]
    inla_parse_expert...
        section[INLA.Expert]
            disable.gaussian.check=[0]
            cpo.manual=[0]
            jp.file=[(null)]
            jp.model=[(null)]
    parse section=[1] name=[INLA.Model] type=[PROBLEM]
    inla_parse_problem...
        name=[INLA.Model]
        R-INLA version=[21.11.22]
        R-INLA build date=[Sun Nov 21 06:58:54 PM +03 2021 (Version_21.11.22)]
        Build tag=[Version_21.11.22]
        openmp.strategy=[default]
        pardiso-library installed and working? = [no]
        smtp = [taucs]
        strategy = [default]
    store results in directory=[C:\Users\olala\AppData\Local\Temp\RtmpmoQIL8\file42d863176f35/results.files]
        output:
            cpo=[0]
            po=[0]
            dic=[1]
            kld=[1]
            mlik=[1]
            q=[0]
            graph=[0]
            hyperparameters=[1]
            summary=[1]
            return.marginals=[1]
            return.marginals.predictor=[0]
            nquantiles=[3]  [ 0.025 0.5 0.975 ]
            ncdf=[0]  [ ]
    parse section=[3] name=[Predictor] type=[PREDICTOR]
    inla_parse_predictor ...
        section=[Predictor]
        dir=[predictor]
        PRIOR->name=[loggamma]
        hyperid=[53001|Predictor]
        PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
        PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
        PRIOR->PARAMETERS=[1, 1e-05]
        initialise log_precision[13.8155]
        fixed=[1]
        user.scale=[1]
        vb.correct=[0]
        n=[927922]
        m=[928253]
        ndata=[928253]
        compute=[1]
        read offsets from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd]
        read n=[3712350] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd]
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 0/1856175  (idx,y) = (0, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 1/1856175  (idx,y) = (1, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 2/1856175  (idx,y) = (2, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 3/1856175  (idx,y) = (3, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 4/1856175  (idx,y) = (4, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 5/1856175  (idx,y) = (5, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 6/1856175  (idx,y) = (6, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 7/1856175  (idx,y) = (7, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 8/1856175  (idx,y) = (8, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 9/1856175  (idx,y) = (9, 0)
        read link.fitted.values from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6]
        read n=[3712350] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6]
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 0/1856175  (idx,y) = (0, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 1/1856175  (idx,y) = (1, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 2/1856175  (idx,y) = (2, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 3/1856175  (idx,y) = (3, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 4/1856175  (idx,y) = (4, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 5/1856175  (idx,y) = (5, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 6/1856175  (idx,y) = (6, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 7/1856175  (idx,y) = (7, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 8/1856175  (idx,y) = (8, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 9/1856175  (idx,y) = (9, 0)
        A=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d835cebde]
        Aext=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d871401637]
        AextPrecision=[3.269e+06]
        output:
            summary=[1]
            return.marginals=[1]
            return.marginals.predictor=[0]
            nquantiles=[3]  [ 0.025 0.5 0.975 ]
            ncdf=[0]  [ ]
    parse section=[2] name=[INLA.Data1] type=[DATA]
    inla_parse_data [section 1]...
        tag=[INLA.Data1]
        family=[BINOMIAL]
        likelihood=[BINOMIAL]
        file->name=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d86174596]
        file->name=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81b846549]
        file->name=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d820be393a]
        file->name=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d818b01b8e]
        read n=[192] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d86174596]
        mdata.nattributes = 0
            0/64  (idx,a,y,d) = (0, 412, 340, 1)
            1/64  (idx,a,y,d) = (1, 216, 65, 1)
            2/64  (idx,a,y,d) = (2, 100, 90, 1)
            3/64  (idx,a,y,d) = (3, 299, 4, 1)
            4/64  (idx,a,y,d) = (4, 114, 67, 1)
            5/64  (idx,a,y,d) = (5, 617, 433, 1)
            6/64  (idx,a,y,d) = (6, 538, 113, 1)
            7/64  (idx,a,y,d) = (7, 469, 60, 1)
            8/64  (idx,a,y,d) = (8, 216, 41, 1)
            9/64  (idx,a,y,d) = (9, 216, 56, 1)
        likelihood.variant=[0]
        Link model   [LOGIT]
        Link order   [-1]
        Link variant [-1]
        Link a       [1]
        Link ntheta  [0]
        mix.use[0]
    parse section=[10] name=[spatial.field] type=[FFIELD]
    inla_parse_ffield...
        section=[spatial.field]
        dir=[random.effect00000001]
        model=[spde2]
        PRIOR0->name=[mvnorm]
        hyperid=[23001|spatial.field]
        PRIOR0->from_theta=[function (x) <<NEWLINE>>x]
        PRIOR0->to_theta = [function (x) <<NEWLINE>>x]
        PRIOR0->PARAMETERS0[0]=[-1.27923]
        PRIOR0->PARAMETERS0[1]=[0.0137208]
        PRIOR0->PARAMETERS0[2]=[0.1]
        PRIOR0->PARAMETERS0[3]=[0]
        PRIOR0->PARAMETERS0[4]=[0]
        PRIOR0->PARAMETERS0[5]=[0.1]
        vb.correct=[-1]
        correct=[-1]
        constr=[0]
        diagonal=[0]
        id.names=<not present>
        compute=[1]
        nrep=[1]
        ngroup=[1]
        read covariates from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9]
        read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9]
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 0/927922  (idx,y) = (0, 1)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 1/927922  (idx,y) = (1, 44)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 2/927922  (idx,y) = (2, 45)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 3/927922  (idx,y) = (3, 61)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 4/927922  (idx,y) = (4, 73)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 5/927922  (idx,y) = (5, 76)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 6/927922  (idx,y) = (6, 77)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 7/927922  (idx,y) = (7, 87)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 8/927922  (idx,y) = (8, 89)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 9/927922  (idx,y) = (9, 90)
        spde2.prefix = [C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d863316bce/file42d859468e3.]
        spde2.transform = [identity]
        ntheta (max) = [2]
        initialise theta[0]=[-1.27923]
        fixed[0]=[0]
        initialise theta[1]=[0.0137208]
        fixed[1]=[0]
        ntheta (used) = [2]
        computed/guessed rank-deficiency = [0]
        output:
            summary=[1]
            return.marginals=[1]
            return.marginals.predictor=[0]
            nquantiles=[3]  [ 0.025 0.5 0.975 ]
            ncdf=[0]  [ ]
    section=[4] name=[Intercept] type=[LINEAR]
    inla_parse_linear...
        section[Intercept]
        dir=[fixed.effect00000001]
        file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686]
        read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686]
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 0/927922  (idx,y) = (0, 1)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 1/927922  (idx,y) = (1, 1)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 2/927922  (idx,y) = (2, 1)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 3/927922  (idx,y) = (3, 1)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 4/927922  (idx,y) = (4, 1)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 5/927922  (idx,y) = (5, 1)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 6/927922  (idx,y) = (6, 1)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 7/927922  (idx,y) = (7, 1)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 8/927922  (idx,y) = (8, 1)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 9/927922  (idx,y) = (9, 1)
        prior mean=[0]
        prior precision=[0.001]
        compute=[1]
        output:
            summary=[1]
            return.marginals=[1]
            return.marginals.predictor=[0]
            nquantiles=[3]  [ 0.025 0.5 0.975 ]
            ncdf=[0]  [ ]
    section=[5] name=[Access] type=[LINEAR]
    inla_parse_linear...
        section[Access]
        dir=[fixed.effect00000002]
        file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255]
        read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255]
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 0/927922  (idx,y) = (0, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 1/927922  (idx,y) = (1, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 2/927922  (idx,y) = (2, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 3/927922  (idx,y) = (3, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 4/927922  (idx,y) = (4, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 5/927922  (idx,y) = (5, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 6/927922  (idx,y) = (6, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 7/927922  (idx,y) = (7, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 8/927922  (idx,y) = (8, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 9/927922  (idx,y) = (9, 0)
        prior mean=[0]
        prior precision=[0.001]
        compute=[1]
        output:
            summary=[1]
            return.marginals=[1]
            return.marginals.predictor=[0]
            nquantiles=[3]  [ 0.025 0.5 0.975 ]
            ncdf=[0]  [ ]
    section=[6] name=[Elevation] type=[LINEAR]
    inla_parse_linear...
        section[Elevation]
        dir=[fixed.effect00000003]
        file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c]
        read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c]
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 0/927922  (idx,y) = (0, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 1/927922  (idx,y) = (1, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 2/927922  (idx,y) = (2, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 3/927922  (idx,y) = (3, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 4/927922  (idx,y) = (4, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 5/927922  (idx,y) = (5, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 6/927922  (idx,y) = (6, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 7/927922  (idx,y) = (7, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 8/927922  (idx,y) = (8, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 9/927922  (idx,y) = (9, 0)
        prior mean=[0]
        prior precision=[0.001]
        compute=[1]
        output:
            summary=[1]
            return.marginals=[1]
            return.marginals.predictor=[0]
            nquantiles=[3]  [ 0.025 0.5 0.975 ]
            ncdf=[0]  [ ]
    section=[7] name=[EVI] type=[LINEAR]
    inla_parse_linear...
        section[EVI]
        dir=[fixed.effect00000004]
        file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a]
        read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a]
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 0/927922  (idx,y) = (0, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 1/927922  (idx,y) = (1, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 2/927922  (idx,y) = (2, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 3/927922  (idx,y) = (3, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 4/927922  (idx,y) = (4, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 5/927922  (idx,y) = (5, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 6/927922  (idx,y) = (6, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 7/927922  (idx,y) = (7, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 8/927922  (idx,y) = (8, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 9/927922  (idx,y) = (9, 0)
        prior mean=[0]
        prior precision=[0.001]
        compute=[1]
        output:
            summary=[1]
            return.marginals=[1]
            return.marginals.predictor=[0]
            nquantiles=[3]  [ 0.025 0.5 0.975 ]
            ncdf=[0]  [ ]
    section=[8] name=[LST_day] type=[LINEAR]
    inla_parse_linear...
        section[LST_day]
        dir=[fixed.effect00000005]
        file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a]
        read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a]
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 0/927922  (idx,y) = (0, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 1/927922  (idx,y) = (1, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 2/927922  (idx,y) = (2, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 3/927922  (idx,y) = (3, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 4/927922  (idx,y) = (4, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 5/927922  (idx,y) = (5, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 6/927922  (idx,y) = (6, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 7/927922  (idx,y) = (7, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 8/927922  (idx,y) = (8, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 9/927922  (idx,y) = (9, 0)
        prior mean=[0]
        prior precision=[0.001]
        compute=[1]
        output:
            summary=[1]
            return.marginals=[1]
            return.marginals.predictor=[0]
            nquantiles=[3]  [ 0.025 0.5 0.975 ]
            ncdf=[0]  [ ]
    section=[9] name=[Rain] type=[LINEAR]
    inla_parse_linear...
        section[Rain]
        dir=[fixed.effect00000006]
        file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7]
        read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7]
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 0/927922  (idx,y) = (0, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 1/927922  (idx,y) = (1, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 2/927922  (idx,y) = (2, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 3/927922  (idx,y) = (3, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 4/927922  (idx,y) = (4, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 5/927922  (idx,y) = (5, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 6/927922  (idx,y) = (6, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 7/927922  (idx,y) = (7, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 8/927922  (idx,y) = (8, 0)
        file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 9/927922  (idx,y) = (9, 0)
        prior mean=[0]
        prior precision=[0.001]
        compute=[1]
        output:
            summary=[1]
            return.marginals=[1]
            return.marginals.predictor=[0]
            nquantiles=[3]  [ 0.025 0.5 0.975 ]
            ncdf=[0]  [ ]
    parse section=[14] name=[INLA.pardiso] type=[PARDISO]
    inla_parse_pardiso...
        section[INLA.pardiso]
        verbose[0]
        debug[0]
        parallel.reordering[1]
        nrhs[-1]
    parse section=[13] name=[INLA.lp.scale] type=[LP.SCALE]
    inla_parse_lp_scale...
        section[INLA.lp.scale]
    Index table: number of entries[9], total length[1856623]
        tag                            start-index     length
        APredictor                              0     928253
        Predictor                          928253     927922
        spatial.Error in inla.inlaprogram.has.crashed() :
  The inla-program exited with an error. Unless you interupted it yourself, please rerun with verbose=TRUE and check the output carefully.
  If this does not help, please contact the developers at <he...@r-inla.org>
Attached is the google drive linke to the data for the model
Thanks for your help.
Lanre

INLA help

unread,
May 16, 2022, 2:55:18 AMMay 16
to Olanrewaju Lawal, R-inla discussion group
Can u upgrade to R 4.2, install the most recent  testing version and set

inla.setOption(inla.mode=“experimental”)

after loading the package 



From: r-inla-disc...@googlegroups.com <r-inla-disc...@googlegroups.com> on behalf of Olanrewaju Lawal <olanrewa...@uniport.edu.ng>
Sent: Monday, May 16, 2022 9:42:19 AM
To: R-inla discussion group <r-inla-disc...@googlegroups.com>
Subject: [r-inla] INLA Crashes around Index Table Entry
 
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