Hi all,
I am running into an error when fitting a binomial model in inlabru and would appreciate some help debugging. I’ve included a simplified version of my code and the error below.
If it would help with debugging, I am happy to share the dataset privately with the INLA Team (inlabru version: 2.13.0; INLA version: 25.06.22-1.)
Here is my code:
bru(comps_1,
+ bru_obs(family = "binomial",Ntrials = 1,control.family = list(link = "logit"),
+ data = DF_sf2,
+ formula = HTN_2 ~ Intercept + Height + Category + Surface + Volume +
+ sWBT14 + Pop20 + PM + EVI + PN_Score + TS_Score + CAC_Score +
+ WLTH + AGE + EMP + MAR + INC + EDU + SEX + YRS + field2),
+ options = list(control.compute = list(waic = TRUE, cpo = FALSE),
+ control.inla = list(strategy = "adaptive", int.strategy = "eb"),
+ verbose = TRUE)
+ )
Read ntt 6 1 with max.threads 6
Found num.threads = 6:1 max_threads = 6
Version.......[Version_25.06.22-1]
Build-time....[Sun Jun 22 18:13:01 2025]
MAX_THREADS...[6]
Report issues/bugs to <he...@r-inla.org>
cwd[F:\USP_Accra]
Process file/directory[C:\Users\pma311\AppData\Local\Temp\RtmpSOUD60\file34c5d58687e/Model.ini] model[0/1/] threads[6] max.threads[6] blas_threads_force[0] nested[6:1]
Run with model[C:\Users\pma311\AppData\Local\Temp\RtmpSOUD60\file34c5d58687e/Model.ini]
inla_build...
number of sections=[32]
parse section=[31] name=[INLA.numa] type=[NUMA]
inla_parse_numa...
section[INLA.numa]
enable[0]
parse section=[29] name=[INLA.stiles] type=[STILES]
inla_parse_stiles...
section[INLA.stiles]
verbose[0]
tile.size[0]
default tile.size[0]
parse section=[0] name=[INLA.libR] type=[LIBR]
inla_parse_libR...
section[INLA.libR]
R_HOME=[C:/PROGRA~1/R/R-45~1.1]
parse section=[26] name=[INLA.Expert] type=[EXPERT]
inla_parse_expert...
section[INLA.Expert]
disable.gaussian.check=[0]
Measure dot.product.gain=[No]
Optimise linear solve = [No]
cpo.manual=[0]
jp.file=[(null)]
jp.model=[(null)]
parse section=[1] name=[INLA.Model] type=[PROBLEM]
inla_parse_problem...
name=[INLA.Model]
R-INLA version = [25.06.22-1]
R-INLA build date = [20261]
Build tag = [devel]
System memory = [127 Gb]
L3 cache = [0 Mb]
Cores = (Physical= 6, Logical= 6)
NUMA not available
'char' is signed
'short int' is 2 bytes
'int' is 4 bytes
'size_t' is 8 bytes
'long int' is 4 bytes
'long long' is 8 bytes
'float' is 4 bytes
'double' is 8 bytes
'long double' is 16 bytes
BUFSIZ is 512 bytes
CACHE_LINE_SIZE is 64 bytes
GCC/Compiler version[14.2.1 20240801 (Fedora MinGW 14.2.1-4.fc42)]
Compiler macro defined [__MMX_WITH_SSE__]
Compiler macro defined [__SSE__]
Compiler macro defined [__SSE2__]
Compiler macro defined [__SSE2_MATH__]
Compiler macro defined [__SSE_MATH__]
Compiled with -DINLA_WITH_LIBR
Compiled with -DINLA_WITH_MUPARSER
openmp.strategy=[default]
pardiso-library installed and working? = [no]
smtp = [taucs]
strategy = [default]
store results in directory=[C:\Users\pma311\AppData\Local\Temp\RtmpSOUD60\file34c5d58687e/results.files-0000000000]
output:
gcpo=[0]
num.level.sets=[-1]
size.max=[32]
strategy=[Posterior]
correct.hyperpar=[1]
epsilon=[0.005]
prior.diagonal=[0.0001]
keep=[]
remove.fixed=[1]
remove=[]
cpo=[0]
po=[1]
dic=[0]
kld=[1]
mlik=[1]
q=[0]
graph=[0]
hyperparameters=[1]
config=[1]
config.lite=[0]
likelihood.info=[0]
internal.opt=[1]
save.memory=[0]
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[3] name=[Predictor] type=[PREDICTOR]
inla_parse_predictor ...
section=[Predictor]
dir=[predictor]
PRIOR->name=[loggamma]
hyperid=[53001|Predictor]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 1e-05]
initialise log_precision[13.8155]
fixed=[1]
user.scale=[1]
n=[10995]
m=[2995]
ndata=[2995]
compute=[1]
read offsets from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c41b2eb4]
read n=[27980] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c41b2eb4]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c41b2eb4] 0/13990 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c41b2eb4] 1/13990 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c41b2eb4] 2/13990 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c41b2eb4] 3/13990 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c41b2eb4] 4/13990 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c41b2eb4] 5/13990 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c41b2eb4] 6/13990 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c41b2eb4] 7/13990 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c41b2eb4] 8/13990 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c41b2eb4] 9/13990 (idx,y) = (9, 0)
read link.fitted.values from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c412b20fe]
read n=[27980] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c412b20fe]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c412b20fe] 0/13990 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c412b20fe] 1/13990 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c412b20fe] 2/13990 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c412b20fe] 3/13990 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c412b20fe] 4/13990 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c412b20fe] 5/13990 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c412b20fe] 6/13990 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c412b20fe] 7/13990 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c412b20fe] 8/13990 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c412b20fe] 9/13990 (idx,y) = (9, 0)
A=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c10cb74c1]
Aext=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4b3c2b69]
AextPrecision=[3.269e+06]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[2] name=[INLA.Data1] type=[DATA]
inla_parse_data [section 1]...
tag=[INLA.Data1]
family=[BINOMIAL]
likelihood=[BINOMIAL]
file->name=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c25793774]
file->name=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3a2adc8]
file->name=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c39ae4b5f]
file->name=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2ea02c2f]
read n=[8985] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c25793774]
0/2995 (idx,a,y,d) = (0, 1, 0, 1)
1/2995 (idx,a,y,d) = (1, 1, 0, 1)
2/2995 (idx,a,y,d) = (2, 1, 1, 1)
3/2995 (idx,a,y,d) = (3, 1, 0, 1)
4/2995 (idx,a,y,d) = (4, 1, 0, 1)
5/2995 (idx,a,y,d) = (5, 1, 1, 1)
6/2995 (idx,a,y,d) = (6, 1, 1, 1)
7/2995 (idx,a,y,d) = (7, 1, 0, 1)
8/2995 (idx,a,y,d) = (8, 1, 0, 1)
9/2995 (idx,a,y,d) = (9, 1, 0, 1)
likelihood.variant=[0]
Link model [LOGIT]
Link order [-1]
Link variant [-1]
Link a [1]
Link ntheta [0]
mix.use[0]
parse section=[6] name=[Category] type=[FFIELD]
inla_parse_ffield...
section=[Category]
dir=[random.effect0000000001]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|Category]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55db3122]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55db3122]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55db3122] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55db3122] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55db3122] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55db3122] 3/10995 (idx,y) = (3, 1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55db3122] 4/10995 (idx,y) = (4, 2)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55db3122] 5/10995 (idx,y) = (5, 3)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55db3122] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55db3122] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55db3122] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55db3122] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c34940f]
nlocations=[4]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[16] name=[WLTH] type=[FFIELD]
inla_parse_ffield...
section=[WLTH]
dir=[random.effect0000000002]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|WLTH]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4ed3739b]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4ed3739b]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4ed3739b] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4ed3739b] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4ed3739b] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4ed3739b] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4ed3739b] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4ed3739b] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4ed3739b] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4ed3739b] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4ed3739b] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c4ed3739b] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6d50524a]
nlocations=[5]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
locations[4]=[5]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[18] name=[EMP] type=[FFIELD]
inla_parse_ffield...
section=[EMP]
dir=[random.effect0000000003]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|EMP]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c12e26a1b]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c12e26a1b]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c12e26a1b] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c12e26a1b] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c12e26a1b] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c12e26a1b] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c12e26a1b] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c12e26a1b] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c12e26a1b] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c12e26a1b] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c12e26a1b] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c12e26a1b] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c31be2411]
nlocations=[4]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[19] name=[MAR] type=[FFIELD]
inla_parse_ffield...
section=[MAR]
dir=[random.effect0000000004]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|MAR]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c54143306]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c54143306]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c54143306] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c54143306] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c54143306] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c54143306] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c54143306] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c54143306] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c54143306] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c54143306] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c54143306] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c54143306] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5df669fe]
nlocations=[4]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[20] name=[INC] type=[FFIELD]
inla_parse_ffield...
section=[INC]
dir=[random.effect0000000005]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|INC]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c49d07f27]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c49d07f27]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c49d07f27] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c49d07f27] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c49d07f27] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c49d07f27] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c49d07f27] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c49d07f27] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c49d07f27] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c49d07f27] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c49d07f27] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c49d07f27] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34ca314ad8]
nlocations=[7]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
locations[4]=[5]
locations[5]=[6]
locations[6]=[7]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[21] name=[EDU] type=[FFIELD]
inla_parse_ffield...
section=[EDU]
dir=[random.effect0000000006]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|EDU]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6f2a15c1]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6f2a15c1]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6f2a15c1] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6f2a15c1] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6f2a15c1] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6f2a15c1] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6f2a15c1] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6f2a15c1] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6f2a15c1] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6f2a15c1] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6f2a15c1] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6f2a15c1] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1a4f477d]
nlocations=[7]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
locations[4]=[5]
locations[5]=[6]
locations[6]=[7]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[22] name=[SEX] type=[FFIELD]
inla_parse_ffield...
section=[SEX]
dir=[random.effect0000000007]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|SEX]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36eb26fc]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36eb26fc]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36eb26fc] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36eb26fc] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36eb26fc] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36eb26fc] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36eb26fc] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36eb26fc] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36eb26fc] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36eb26fc] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36eb26fc] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36eb26fc] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cf055a4c]
nlocations=[4]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[24] name=[field2] type=[FFIELD]
inla_parse_ffield...
section=[field2]
dir=[random.effect0000000008]
model=[spde2]
PRIOR0->name=[pcmatern]
hyperid=[23001|field2]
PRIOR0->from_theta=[function (x) <<NEWLINE>>x]
PRIOR0->to_theta = [function (x) <<NEWLINE>>x]
PRIOR0->PARAMETERS0[0]=[3465.74]
PRIOR0->PARAMETERS0[1]=[0.693147]
PRIOR0->PARAMETERS0[2]=[2]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<not present>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c700e1e64]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c700e1e64]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c700e1e64] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c700e1e64] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c700e1e64] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c700e1e64] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c700e1e64] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c700e1e64] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c700e1e64] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c700e1e64] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c700e1e64] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c700e1e64] 9/10995 (idx,y) = (9, -1)
spde2.prefix = [C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5c342281/file34c6f2c5eab.]
spde2.transform = [identity]
ntheta (max) = [2]
initialise theta[0]=[9.51719]
fixed[0]=[0]
initialise theta[1]=[-1]
fixed[1]=[0]
ntheta (used) = [2]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[4] name=[Intercept] type=[LINEAR]
inla_parse_linear...
section[Intercept]
dir=[fixed.effect0000000001]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5ff5349]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5ff5349]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5ff5349] 0/10995 (idx,y) = (0, 1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5ff5349] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5ff5349] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5ff5349] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5ff5349] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5ff5349] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5ff5349] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5ff5349] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5ff5349] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c5ff5349] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[5] name=[Height] type=[LINEAR]
inla_parse_linear...
section[Height]
dir=[fixed.effect0000000002]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55d26a5b]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55d26a5b]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55d26a5b] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55d26a5b] 1/10995 (idx,y) = (1, 1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55d26a5b] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55d26a5b] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55d26a5b] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55d26a5b] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55d26a5b] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55d26a5b] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55d26a5b] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c55d26a5b] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[7] name=[Surface] type=[LINEAR]
inla_parse_linear...
section[Surface]
dir=[fixed.effect0000000003]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cec9248d]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cec9248d]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cec9248d] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cec9248d] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cec9248d] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cec9248d] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cec9248d] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cec9248d] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cec9248d] 6/10995 (idx,y) = (6, 1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cec9248d] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cec9248d] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34cec9248d] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[8] name=[Volume] type=[LINEAR]
inla_parse_linear...
section[Volume]
dir=[fixed.effect0000000004]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1f896069]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1f896069]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1f896069] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1f896069] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1f896069] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1f896069] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1f896069] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1f896069] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1f896069] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1f896069] 7/10995 (idx,y) = (7, 1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1f896069] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1f896069] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[9] name=[sWBT14] type=[LINEAR]
inla_parse_linear...
section[sWBT14]
dir=[fixed.effect0000000005]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c14433179]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c14433179]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c14433179] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c14433179] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c14433179] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c14433179] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c14433179] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c14433179] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c14433179] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c14433179] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c14433179] 8/10995 (idx,y) = (8, 1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c14433179] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[10] name=[Pop20] type=[LINEAR]
inla_parse_linear...
section[Pop20]
dir=[fixed.effect0000000006]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1af918bf]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1af918bf]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1af918bf] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1af918bf] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1af918bf] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1af918bf] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1af918bf] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1af918bf] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1af918bf] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1af918bf] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1af918bf] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c1af918bf] 9/10995 (idx,y) = (9, 1)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[11] name=[PM] type=[LINEAR]
inla_parse_linear...
section[PM]
dir=[fixed.effect0000000007]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c378d7df2]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c378d7df2]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c378d7df2] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c378d7df2] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c378d7df2] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c378d7df2] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c378d7df2] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c378d7df2] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c378d7df2] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c378d7df2] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c378d7df2] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c378d7df2] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[12] name=[EVI] type=[LINEAR]
inla_parse_linear...
section[EVI]
dir=[fixed.effect0000000008]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c40cc7ad2]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c40cc7ad2]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c40cc7ad2] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c40cc7ad2] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c40cc7ad2] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c40cc7ad2] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c40cc7ad2] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c40cc7ad2] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c40cc7ad2] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c40cc7ad2] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c40cc7ad2] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c40cc7ad2] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[13] name=[PN_Score] type=[LINEAR]
inla_parse_linear...
section[PN_Score]
dir=[fixed.effect0000000009]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36f32e21]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36f32e21]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36f32e21] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36f32e21] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36f32e21] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36f32e21] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36f32e21] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36f32e21] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36f32e21] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36f32e21] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36f32e21] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c36f32e21] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[14] name=[TS_Score] type=[LINEAR]
inla_parse_linear...
section[TS_Score]
dir=[fixed.effect0000000010]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c47523b3f]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c47523b3f]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c47523b3f] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c47523b3f] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c47523b3f] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c47523b3f] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c47523b3f] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c47523b3f] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c47523b3f] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c47523b3f] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c47523b3f] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c47523b3f] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[15] name=[CAC_Score] type=[LINEAR]
inla_parse_linear...
section[CAC_Score]
dir=[fixed.effect0000000011]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2dec3b7]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2dec3b7]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2dec3b7] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2dec3b7] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2dec3b7] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2dec3b7] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2dec3b7] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2dec3b7] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2dec3b7] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2dec3b7] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2dec3b7] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c2dec3b7] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[17] name=[AGE] type=[LINEAR]
inla_parse_linear...
section[AGE]
dir=[fixed.effect0000000012]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6e5a386]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6e5a386]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6e5a386] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6e5a386] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6e5a386] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6e5a386] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6e5a386] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6e5a386] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6e5a386] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6e5a386] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6e5a386] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c6e5a386] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[23] name=[YRS] type=[LINEAR]
inla_parse_linear...
section[YRS]
dir=[fixed.effect0000000013]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3e5d4daa]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3e5d4daa]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3e5d4daa] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3e5d4daa] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3e5d4daa] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3e5d4daa] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3e5d4daa] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3e5d4daa] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3e5d4daa] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3e5d4daa] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3e5d4daa] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c5d58687e/data.files/file34c3e5d4daa] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[28] name=[INLA.pardiso] type=[PARDISO]
inla_parse_pardiso...
section[INLA.pardiso]
verbose[0]
debug[0]
parallel.reordering[1]
nrhs[-1]
parse section=[30] name=[INLA.taucs] type=[TAUCS]
inla_parse_taucs...
section[INLA.taucs]
block.size[40]
parse section=[27] name=[INLA.lp.scale] type=[LP.SCALE]
inla_parse_lp_scale...
section[INLA.lp.scale]
lp_scale variables in use = [ ]
Index table: number of entries[23], total length[24985]
tag start-index length
APredictor 0 2995
Predictor 2995 10995
Category 13990 4
WLTH 13994 5
EMP 13999 4
MAR 14003 4
INC 14007 7
EDU 14014 7
SEX 14021 4
field2 14025 10947
Intercept 24972 1
Height 24973 1
Surface 24974 1
Volume 24975 1
sWBT14 24976 1
Pop20 24977 1
PM 24978 1
EVI 24979 1
PN_Score 24980 1
TS_Score 24981 1
CAC_Score 24982 1
AGE 24983 1
YRS 24984 1
List of hyperparameters:
theta[0] = [log(Range) for field2]
theta[1] = [log(Stdev) for field2]
parse section=[25] name=[INLA.Parameters] type=[INLA]
inla_parse_INLA...
section[INLA.Parameters]
lincomb.derived.correlation.matrix = [No]
global_node.factor = 2.000
global_node.degree = 2147483647
reordering = -1
constr.marginal.diagonal = 1.49e-08
Contents of ai_param 000001AD21FD9A30
Optimiser: DEFAULT METHOD
Option for GSL-BFGS2: tol = 0.1
Option for GSL-BFGS2: step_size = 1
Option for GSL-BFGS2: epsx = 0.001
Option for GSL-BFGS2: epsf = 0.002
Option for GSL-BFGS2: epsg = 0.005
Restart: 0
Optimise: try to be smart: Yes
Optimise: use directions: Yes
Mode restart: Yes
Mode fixed: No
Mode use_mode: No
parallel linesearch [0]
Gaussian approximation:
tolerance_func = 0.002
tolerance_step = 2.5e-06
optpar_fp = 0
optpar_nr_step_factor = -0.1
Gaussian data: No
Strategy: Use an adaptive strategy (max=25)
Fast mode: On
Use linear approximation to log(|Q +c|)? Yes
Method: Compute the derivative exact
Parameters for improved approximations
Number of points eAssertion failed: ABS(res[1] - res[3]) < DMAX(1, ABS(res[1])) * eps, file src/inla.c, line 5865
*** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1
Read ntt 6 1 with max.threads 6
Found num.threads = 6:1 max_threads = 6
Version.......[Version_25.06.22-1]
Build-time....[Sun Jun 22 18:13:01 2025]
MAX_THREADS...[6]
Report issues/bugs to <he...@r-inla.org>
cwd[F:\USP_Accra]
Process file/directory[C:\Users\pma311\AppData\Local\Temp\RtmpSOUD60\file34c116f579f/Model.ini] model[0/1/] threads[6] max.threads[6] blas_threads_force[0] nested[6:1]
Run with model[C:\Users\pma311\AppData\Local\Temp\RtmpSOUD60\file34c116f579f/Model.ini]
inla_build...
number of sections=[32]
parse section=[31] name=[INLA.numa] type=[NUMA]
inla_parse_numa...
section[INLA.numa]
enable[0]
parse section=[29] name=[INLA.stiles] type=[STILES]
inla_parse_stiles...
section[INLA.stiles]
verbose[0]
tile.size[0]
default tile.size[0]
parse section=[0] name=[INLA.libR] type=[LIBR]
inla_parse_libR...
section[INLA.libR]
R_HOME=[C:/PROGRA~1/R/R-45~1.1]
parse section=[26] name=[INLA.Expert] type=[EXPERT]
inla_parse_expert...
section[INLA.Expert]
disable.gaussian.check=[0]
Measure dot.product.gain=[No]
Optimise linear solve = [No]
cpo.manual=[0]
jp.file=[(null)]
jp.model=[(null)]
parse section=[1] name=[INLA.Model] type=[PROBLEM]
inla_parse_problem...
name=[INLA.Model]
R-INLA version = [25.06.22-1]
R-INLA build date = [20261]
Build tag = [devel]
System memory = [127 Gb]
L3 cache = [0 Mb]
Cores = (Physical= 6, Logical= 6)
NUMA not available
'char' is signed
'short int' is 2 bytes
'int' is 4 bytes
'size_t' is 8 bytes
'long int' is 4 bytes
'long long' is 8 bytes
'float' is 4 bytes
'double' is 8 bytes
'long double' is 16 bytes
BUFSIZ is 512 bytes
CACHE_LINE_SIZE is 64 bytes
GCC/Compiler version[14.2.1 20240801 (Fedora MinGW 14.2.1-4.fc42)]
Compiler macro defined [__MMX_WITH_SSE__]
Compiler macro defined [__SSE__]
Compiler macro defined [__SSE2__]
Compiler macro defined [__SSE2_MATH__]
Compiler macro defined [__SSE_MATH__]
Compiled with -DINLA_WITH_LIBR
Compiled with -DINLA_WITH_MUPARSER
openmp.strategy=[default]
pardiso-library installed and working? = [no]
smtp = [taucs]
strategy = [default]
store results in directory=[C:\Users\pma311\AppData\Local\Temp\RtmpSOUD60\file34c116f579f/results.files-0000000000]
output:
gcpo=[0]
num.level.sets=[-1]
size.max=[32]
strategy=[Posterior]
correct.hyperpar=[1]
epsilon=[0.005]
prior.diagonal=[0.0001]
keep=[]
remove.fixed=[1]
remove=[]
cpo=[0]
po=[0]
dic=[0]
kld=[1]
mlik=[1]
q=[0]
graph=[0]
hyperparameters=[1]
config=[0]
config.lite=[0]
likelihood.info=[0]
internal.opt=[1]
save.memory=[0]
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[3] name=[Predictor] type=[PREDICTOR]
inla_parse_predictor ...
section=[Predictor]
dir=[predictor]
PRIOR->name=[loggamma]
hyperid=[53001|Predictor]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 1e-05]
initialise log_precision[13.8155]
fixed=[1]
user.scale=[1]
n=[10995]
m=[2995]
ndata=[2995]
compute=[1]
read offsets from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a7175da]
read n=[27980] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a7175da]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a7175da] 0/13990 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a7175da] 1/13990 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a7175da] 2/13990 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a7175da] 3/13990 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a7175da] 4/13990 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a7175da] 5/13990 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a7175da] 6/13990 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a7175da] 7/13990 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a7175da] 8/13990 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a7175da] 9/13990 (idx,y) = (9, 0)
read link.fitted.values from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6af55bcc]
read n=[27980] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6af55bcc]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6af55bcc] 0/13990 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6af55bcc] 1/13990 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6af55bcc] 2/13990 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6af55bcc] 3/13990 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6af55bcc] 4/13990 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6af55bcc] 5/13990 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6af55bcc] 6/13990 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6af55bcc] 7/13990 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6af55bcc] 8/13990 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6af55bcc] 9/13990 (idx,y) = (9, 0)
A=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c363e7b4]
Aext=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79da1503]
AextPrecision=[3.269e+06]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[2] name=[INLA.Data1] type=[DATA]
inla_parse_data [section 1]...
tag=[INLA.Data1]
family=[BINOMIAL]
likelihood=[BINOMIAL]
file->name=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c7a44567]
file->name=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c52ba6bc]
file->name=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21fd282e]
file->name=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1e3666fc]
read n=[8985] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c7a44567]
0/2995 (idx,a,y,d) = (0, 1, 0, 1)
1/2995 (idx,a,y,d) = (1, 1, 0, 1)
2/2995 (idx,a,y,d) = (2, 1, 1, 1)
3/2995 (idx,a,y,d) = (3, 1, 0, 1)
4/2995 (idx,a,y,d) = (4, 1, 0, 1)
5/2995 (idx,a,y,d) = (5, 1, 1, 1)
6/2995 (idx,a,y,d) = (6, 1, 1, 1)
7/2995 (idx,a,y,d) = (7, 1, 0, 1)
8/2995 (idx,a,y,d) = (8, 1, 0, 1)
9/2995 (idx,a,y,d) = (9, 1, 0, 1)
likelihood.variant=[0]
Link model [LOGIT]
Link order [-1]
Link variant [-1]
Link a [1]
Link ntheta [0]
mix.use[0]
parse section=[6] name=[Category] type=[FFIELD]
inla_parse_ffield...
section=[Category]
dir=[random.effect0000000001]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|Category]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21c376c3]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21c376c3]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21c376c3] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21c376c3] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21c376c3] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21c376c3] 3/10995 (idx,y) = (3, 1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21c376c3] 4/10995 (idx,y) = (4, 2)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21c376c3] 5/10995 (idx,y) = (5, 3)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21c376c3] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21c376c3] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21c376c3] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c21c376c3] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c220e432e]
nlocations=[4]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[16] name=[WLTH] type=[FFIELD]
inla_parse_ffield...
section=[WLTH]
dir=[random.effect0000000002]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|WLTH]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a125d85]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a125d85]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a125d85] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a125d85] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a125d85] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a125d85] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a125d85] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a125d85] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a125d85] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a125d85] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a125d85] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4a125d85] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c8e129f]
nlocations=[5]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
locations[4]=[5]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[18] name=[EMP] type=[FFIELD]
inla_parse_ffield...
section=[EMP]
dir=[random.effect0000000003]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|EMP]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cb2955e2]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cb2955e2]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cb2955e2] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cb2955e2] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cb2955e2] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cb2955e2] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cb2955e2] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cb2955e2] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cb2955e2] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cb2955e2] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cb2955e2] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cb2955e2] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c383a2c39]
nlocations=[4]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[19] name=[MAR] type=[FFIELD]
inla_parse_ffield...
section=[MAR]
dir=[random.effect0000000004]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|MAR]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5b2737c2]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5b2737c2]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5b2737c2] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5b2737c2] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5b2737c2] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5b2737c2] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5b2737c2] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5b2737c2] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5b2737c2] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5b2737c2] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5b2737c2] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5b2737c2] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c41295fb0]
nlocations=[4]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[20] name=[INC] type=[FFIELD]
inla_parse_ffield...
section=[INC]
dir=[random.effect0000000005]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|INC]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1a3c228e]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1a3c228e]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1a3c228e] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1a3c228e] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1a3c228e] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1a3c228e] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1a3c228e] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1a3c228e] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1a3c228e] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1a3c228e] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1a3c228e] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c1a3c228e] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6e81543]
nlocations=[7]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
locations[4]=[5]
locations[5]=[6]
locations[6]=[7]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[21] name=[EDU] type=[FFIELD]
inla_parse_ffield...
section=[EDU]
dir=[random.effect0000000006]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|EDU]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5d3c4c4d]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5d3c4c4d]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5d3c4c4d] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5d3c4c4d] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5d3c4c4d] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5d3c4c4d] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5d3c4c4d] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5d3c4c4d] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5d3c4c4d] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5d3c4c4d] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5d3c4c4d] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c5d3c4c4d] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4e783aca]
nlocations=[7]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
locations[4]=[5]
locations[5]=[6]
locations[6]=[7]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[22] name=[SEX] type=[FFIELD]
inla_parse_ffield...
section=[SEX]
dir=[random.effect0000000007]
model=[iid]
PRIOR->name=[loggamma]
hyperid=[1001|SEX]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 5e-05]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<read>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4f0f78c9]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4f0f78c9]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4f0f78c9] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4f0f78c9] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4f0f78c9] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4f0f78c9] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4f0f78c9] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4f0f78c9] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4f0f78c9] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4f0f78c9] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4f0f78c9] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4f0f78c9] 9/10995 (idx,y) = (9, -1)
file for locations=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c617b1782]
nlocations=[4]
locations[0]=[1]
locations[1]=[2]
locations[2]=[3]
locations[3]=[4]
cyclic=[0]
initialise log_precision[-6.90775]
fixed=[1]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[24] name=[field2] type=[FFIELD]
inla_parse_ffield...
section=[field2]
dir=[random.effect0000000008]
model=[spde2]
PRIOR0->name=[pcmatern]
hyperid=[23001|field2]
PRIOR0->from_theta=[function (x) <<NEWLINE>>x]
PRIOR0->to_theta = [function (x) <<NEWLINE>>x]
PRIOR0->PARAMETERS0[0]=[3465.74]
PRIOR0->PARAMETERS0[1]=[0.693147]
PRIOR0->PARAMETERS0[2]=[2]
vb.correct n[1] -1
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<not present>
compute=[1]
nrep=[1]
ngroup=[1]
Alocal=[no]
read covariates from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c712f3811]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c712f3811]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c712f3811] 0/10995 (idx,y) = (0, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c712f3811] 1/10995 (idx,y) = (1, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c712f3811] 2/10995 (idx,y) = (2, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c712f3811] 3/10995 (idx,y) = (3, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c712f3811] 4/10995 (idx,y) = (4, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c712f3811] 5/10995 (idx,y) = (5, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c712f3811] 6/10995 (idx,y) = (6, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c712f3811] 7/10995 (idx,y) = (7, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c712f3811] 8/10995 (idx,y) = (8, -1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c712f3811] 9/10995 (idx,y) = (9, -1)
spde2.prefix = [C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c685a6163/file34c1d178ea.]
spde2.transform = [identity]
ntheta (max) = [2]
initialise theta[0]=[9.51719]
fixed[0]=[0]
initialise theta[1]=[-1]
fixed[1]=[0]
ntheta (used) = [2]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[4] name=[Intercept] type=[LINEAR]
inla_parse_linear...
section[Intercept]
dir=[fixed.effect0000000001]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3f2c1c75]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3f2c1c75]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3f2c1c75] 0/10995 (idx,y) = (0, 1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3f2c1c75] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3f2c1c75] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3f2c1c75] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3f2c1c75] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3f2c1c75] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3f2c1c75] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3f2c1c75] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3f2c1c75] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3f2c1c75] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[5] name=[Height] type=[LINEAR]
inla_parse_linear...
section[Height]
dir=[fixed.effect0000000002]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c453f4d26]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c453f4d26]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c453f4d26] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c453f4d26] 1/10995 (idx,y) = (1, 1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c453f4d26] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c453f4d26] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c453f4d26] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c453f4d26] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c453f4d26] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c453f4d26] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c453f4d26] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c453f4d26] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[7] name=[Surface] type=[LINEAR]
inla_parse_linear...
section[Surface]
dir=[fixed.effect0000000003]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c783a1625]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c783a1625]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c783a1625] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c783a1625] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c783a1625] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c783a1625] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c783a1625] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c783a1625] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c783a1625] 6/10995 (idx,y) = (6, 1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c783a1625] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c783a1625] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c783a1625] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[8] name=[Volume] type=[LINEAR]
inla_parse_linear...
section[Volume]
dir=[fixed.effect0000000004]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c2a6164e1]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c2a6164e1]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c2a6164e1] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c2a6164e1] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c2a6164e1] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c2a6164e1] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c2a6164e1] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c2a6164e1] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c2a6164e1] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c2a6164e1] 7/10995 (idx,y) = (7, 1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c2a6164e1] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c2a6164e1] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[9] name=[sWBT14] type=[LINEAR]
inla_parse_linear...
section[sWBT14]
dir=[fixed.effect0000000005]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4c341c72]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4c341c72]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4c341c72] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4c341c72] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4c341c72] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4c341c72] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4c341c72] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4c341c72] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4c341c72] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4c341c72] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4c341c72] 8/10995 (idx,y) = (8, 1)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c4c341c72] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[10] name=[Pop20] type=[LINEAR]
inla_parse_linear...
section[Pop20]
dir=[fixed.effect0000000006]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79041b9e]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79041b9e]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79041b9e] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79041b9e] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79041b9e] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79041b9e] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79041b9e] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79041b9e] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79041b9e] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79041b9e] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79041b9e] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c79041b9e] 9/10995 (idx,y) = (9, 1)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[11] name=[PM] type=[LINEAR]
inla_parse_linear...
section[PM]
dir=[fixed.effect0000000007]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6a4c7c7c]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6a4c7c7c]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6a4c7c7c] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6a4c7c7c] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6a4c7c7c] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6a4c7c7c] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6a4c7c7c] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6a4c7c7c] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6a4c7c7c] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6a4c7c7c] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6a4c7c7c] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c6a4c7c7c] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[12] name=[EVI] type=[LINEAR]
inla_parse_linear...
section[EVI]
dir=[fixed.effect0000000008]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c262e3783]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c262e3783]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c262e3783] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c262e3783] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c262e3783] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c262e3783] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c262e3783] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c262e3783] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c262e3783] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c262e3783] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c262e3783] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c262e3783] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[13] name=[PN_Score] type=[LINEAR]
inla_parse_linear...
section[PN_Score]
dir=[fixed.effect0000000009]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cab52438]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cab52438]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cab52438] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cab52438] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cab52438] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cab52438] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cab52438] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cab52438] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cab52438] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cab52438] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cab52438] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34cab52438] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[14] name=[TS_Score] type=[LINEAR]
inla_parse_linear...
section[TS_Score]
dir=[fixed.effect0000000010]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c64566c3a]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c64566c3a]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c64566c3a] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c64566c3a] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c64566c3a] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c64566c3a] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c64566c3a] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c64566c3a] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c64566c3a] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c64566c3a] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c64566c3a] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c64566c3a] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[15] name=[CAC_Score] type=[LINEAR]
inla_parse_linear...
section[CAC_Score]
dir=[fixed.effect0000000011]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c71446bb9]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c71446bb9]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c71446bb9] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c71446bb9] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c71446bb9] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c71446bb9] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c71446bb9] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c71446bb9] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c71446bb9] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c71446bb9] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c71446bb9] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c71446bb9] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[17] name=[AGE] type=[LINEAR]
inla_parse_linear...
section[AGE]
dir=[fixed.effect0000000012]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3b05262b]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3b05262b]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3b05262b] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3b05262b] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3b05262b] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3b05262b] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3b05262b] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3b05262b] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3b05262b] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3b05262b] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3b05262b] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34c3b05262b] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[23] name=[YRS] type=[LINEAR]
inla_parse_linear...
section[YRS]
dir=[fixed.effect0000000013]
file for covariates=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34ceab4e89]
read n=[21990] entries from file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34ceab4e89]
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34ceab4e89] 0/10995 (idx,y) = (0, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34ceab4e89] 1/10995 (idx,y) = (1, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34ceab4e89] 2/10995 (idx,y) = (2, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34ceab4e89] 3/10995 (idx,y) = (3, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34ceab4e89] 4/10995 (idx,y) = (4, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34ceab4e89] 5/10995 (idx,y) = (5, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34ceab4e89] 6/10995 (idx,y) = (6, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34ceab4e89] 7/10995 (idx,y) = (7, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34ceab4e89] 8/10995 (idx,y) = (8, 0)
file=[C:/Users/pma311/AppData/Local/Temp/RtmpSOUD60/file34c116f579f/data.files/file34ceab4e89] 9/10995 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[0]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[28] name=[INLA.pardiso] type=[PARDISO]
inla_parse_pardiso...
section[INLA.pardiso]
verbose[0]
debug[0]
parallel.reordering[1]
nrhs[-1]
parse section=[30] name=[INLA.taucs] type=[TAUCS]
inla_parse_taucs...
section[INLA.taucs]
block.size[40]
parse section=[27] name=[INLA.lp.scale] type=[LP.SCALE]
inla_parse_lp_scale...
section[INLA.lp.scale]
lp_scale variables in use = [ ]
Index table: number of entries[23], total length[24985]
tag start-index length
APredictor 0 2995
Predictor 2995 10995
Category 13990 4
WLTH 13994 5
EMP 13999 4
MAR 14003 4
INC 14007 7
EDU 14014 7
SEX 14021 4
field2 14025 10947
Intercept 24972 1
Height 24973 1
Surface 24974 1
Volume 24975 1
sWBT14 24976 1
Pop20 24977 1
PM 24978 1
EVI 24979 1
PN_Score 24980 1
TS_Score 24981 1
CAC_Score 24982 1
AGE 24983 1
YRS 24984 1
List of hyperparameters:
theta[0] = [log(Range) for field2]
theta[1] = [log(Stdev) for field2]
parse section=[25] name=[INLA.Parameters] type=[INLA]
inla_parse_INLA...
section[INLA.Parameters]
lincomb.derived.correlation.matrix = [No]
global_node.factor = 2.000
global_node.degree = 2147483647
reordering = -1
constr.marginal.diagonal = 1.49e-08
Contents of ai_param 00000222490F0090
Optimiser: DEFAULT METHOD
Option for GSL-BFGS2: tol = 0.1
Option for GSL-BFGS2: step_size = 1
Option for GSL-BFGS2: epsx = 0.002
Option for GSL-BFGS2: epsf = 0.004
Option for GSL-BFGS2: epsg = 0.01
Restart: 0
Optimise: try to be smart: No
Optimise: use directions: Yes
Mode restart: Yes
Mode fixed: No
Mode use_mode: No
parallel linesearch [0]
Gaussian approximation:
tolerance_func = 0.004
tolerance_step = 5e-06
optpar_fp = 0
optpar_nr_step_factor = -0.1
Gaussian data: No
Strategy: Use the Gaussian approximation
Fast mode: On
Use linear approximation to log(|Q +c|)? Yes
Method: Compute the derivative exact
Parameters for improved approximations
NumbAssertion failed: ABS(res[1] - res[3]) < DMAX(1, ABS(res[1])) * eps, file src/inla.c, line 5865
Warning in bru_log_warn(paste0("iinla: Problem in inla:\n", result)) :
iinla: Problem in inla:
Error in inla.core.safe(formula = formula, family = family, contrasts = contrasts, :
The inla-program exited with an error. Unless you interupted it yourself, please rerun with verbose=TRUE and check the output carefully.
If this does not help, please contact the developers at <he...@r-inla.org>.
The inla program failed and the maximum number of tries has been reached.
iinla: Problem in inla:
1: bru(comps_1, bru_obs(family = "binomial", Ntrials = 1, control.family = li [...]
2: iinla(model = info[["model"]], lhoods = info[["lhoods"]], inputs = info[[" [...]
3: fm_try_callstack(...)
4: do.call(INLA::inla, inla.options.merged, envir = environment(model$effects))
5: (function (formula = NULL, family = "gaussian", contrasts = NULL, data = N [...]
6: inla.core.safe(formula = formula, family = family, contrasts = contrasts, [...]
7: stop(paste0(r$message, "\n", "The inla program failed and the maximum numb [...]
iinla: Giving up and returning last successfully obtained result for diagnostic purposes.
inlabru version: 2.13.0
INLA version: 25.06.22-1
Components:
Intercept: main = linear(1), group = exchangeable(1L), replicate = iid(1L), NULL
Height: main = linear(DF_sf2$Built_H), group = exchangeable(1L), replicate = iid(1L), NULL
Category: main = factor(DF_sf2$Built_Category), group = exchangeable(1L), replicate = iid(1L), NULL
Surface: main = linear(DF_sf2$Built_S2020), group = exchangeable(1L), replicate = iid(1L), NULL
Volume: main = linear(DF_sf2$Built_V2020), group = exchangeable(1L), replicate = iid(1L), NULL
sWBT14: main = linear(DF_sf2$swbgt_14day), group = exchangeable(1L), replicate = iid(1L), NULL
Pop20: main = linear(DF_sf2$Pop2020), group = exchangeable(1L), replicate = iid(1L), NULL
PM: main = linear(DF_sf2$PM), group = exchangeable(1L), replicate = iid(1L), NULL
EVI: main = linear(DF_sf2$NDVI), group = exchangeable(1L), replicate = iid(1L), NULL
PN_Score: main = linear(DF_sf2$PN_score), group = exchangeable(1L), replicate = iid(1L), NULL
TS_Score: main = linear(DF_sf2$TS_score), group = exchangeable(1L), replicate = iid(1L), NULL
CAC_Score: main = linear(DF_sf2$CAC_score), group = exchangeable(1L), replicate = iid(1L), NULL
WLTH: main = factor(DF_sf2$wealth_quintile), group = exchangeable(1L), replicate = iid(1L), NULL
AGE: main = linear(DF_sf2$age), group = exchangeable(1L), replicate = iid(1L), NULL
EMP: main = factor(DF_sf2$Emp), group = exchangeable(1L), replicate = iid(1L), NULL
MAR: main = factor(DF_sf2$Marital), group = exchangeable(1L), replicate = iid(1L), NULL
INC: main = factor(DF_sf2$Inc), group = exchangeable(1L), replicate = iid(1L), NULL
EDU: main = factor(DF_sf2$educ), group = exchangeable(1L), replicate = iid(1L), NULL
SEX: main = factor(DF_sf2$Sex), group = exchangeable(1L), replicate = iid(1L), NULL
YRS: main = linear(DF_sf2$YrsInHome), group = exchangeable(1L), replicate = iid(1L), NULL
field2: main = spde(geometry), group = exchangeable(1L), replicate = iid(1L), NULL
Observation models:
Family: 'binomial'
Tag: <No tag>
Data class: 'sf', 'data.frame'
Response class: 'numeric'
Predictor:
HTN_2 ~ Intercept + Height + Category + Surface + Volume + sWBT14 +
Pop20 + PM + EVI + PN_Score + TS_Score + CAC_Score + WLTH +
AGE + EMP + MAR + INC + EDU + SEX + YRS + field2
Additive/Linear: TRUE/TRUE
Used components: effects[Intercept, Height, Category, Surface, Volume, sWBT14, Pop20, PM, EVI, PN_Score, TS_Score, CAC_Score, WLTH, AGE, EMP, MAR, INC, EDU, SEX, YRS, field2], latent[]
Thanks, Håvard. I tried scaling the covariates, but the model still failed. I also tested a simplified version with only the intercept and geometry, and it failed as well. I’ve sent the RData to you privately.
Kind regards,