variable lengths differ (found for 'age')

[Kassahun Abere]

Dear INLA support group,

I am running a geostatistical model for point referenced data using longitude and latitude vales to construct the mesh, and fitted a binary outcome variable with predictor variables. But I keep on getting an error stating that: "  Error in inla.core.safe(formula = formula, family = family, contrasts = contrasts,  :  variable lengths differ (found for 'age')

The inla program failed and the maximum number of tries has been reached." 

May you please help in resolving this error?

The codes are shown below.

Many thanks!

Kassahun  

coords<-cbind(mydata$longitude, mydata$latitude)

 

mesh<-inla.mesh.2d(loc=coords, max.edge = c(0.1, 5), cutoff = 0.002)

A.est<-inla.spde.make.A(mesh=mesh, loc=coords)

spde<-inla.spde2.matern(mesh=mesh, loc=coords)

s.index<-inla.spde.make.index(name="spatial.field", n.spde =spde$n.spde)

stack.est <- inla.stack(data=list(y=mydata$outcome),

    A=list(A.est, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1),

     effects=list(c(s.index, list(Intercept=1)),                               

     list(emp= mydata$empstatus),

    list(marital= mydata$maritstatus),

    list(income=mydata$recevincome),

    list(educ=mydata$educstatus),

    list(TB=mydata$testdTB),

    list(lengthtstd=mydata$lengthTestedHIV),

    list(rdyARV=mydata$redy2strtARV),

   list=(age=mydata$age_q),

    List=(sx=mydata$sx), 

    list(acohl=mydata$freqalcoluse)),

    tag="est")

formula <- y ~ -1 + Intercept + emp+ marital+ income+ educ+ TB+ lengthtstd+ rdyARV+ acohl+age+sx+ f(spatial.field, model=spde)

output <- inla(formula,

    data=inla.stack.data(stack.est, spde=spde),

    family="binomial",Ntrials=1,

    control.predictor=list(A=inla.stack.A(stack.est),

    compute=TRUE),

    control.compute=list(dic=TRUE))

 

*** inla.core.safe:  The inla program failed, but will rerun in case better initial values may help. try=1/1

Error in inla.core.safe(formula = formula, family = family, contrasts = contrasts,  :

  variable lengths differ (found for 'age')

The inla program failed and the maximum number of tries has been reached.