Installation Under R-4.1

[Aaron Wagner]

Can anybody tell me why I cannot seem to install INLA using R-4.1, below is session info:

> sessionInfo()

R version 4.1.0 (2021-05-18)

Platform: x86_64-apple-darwin17.0 (64-bit)

Running under: macOS Catalina 10.15.6

Trying to install with: 

install.packages("INLA",repos=c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"), dep=TRUE)

Encountering this error:

Installing package into ‘/Users/aaronwagner/Desktop/NegBinMixed/renv/library/R-4.1/x86_64-apple-darwin17.0’

(as ‘lib’ is unspecified)

Warning message:

package ‘INLA’ is not available for this version of R

A version of this package for your version of R might be available elsewhere,

see the ideas at

https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages 

> sessionInfo()

Seems to me according the INLA website INLA should be available for R-4.1, but maybe I am missing something

[Helpdesk]

this is what I get. You have installed 'R-4.1' from CRAN, right?


kw-16659:~ rueh$ R

R version 4.1.0 (2021-05-18) -- "Camp Pontanezen"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: Matrix
Loading required package: foreach
Loading required package: parallel
Loading required package: sp
This is INLA_21.07.10-1 built 2021-07-10 12:09:09 UTC.
- See www.r-inla.org/contact-us for how to get help.
- To enable PARDISO sparse library; see inla.pardiso()
>
install.packages("INLA",repos=c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/testing
"), dep=TRUE)
trying URL
'http://inla.r-inla-download.org/R/testing/bin/macosx/contrib/4.1/INLA_21.07.10-1.tgz'
Content type 'application/x-tar' length 57909828 bytes (55.2 MB)
==================================================
downloaded 55.2 MB


The downloaded binary packages are in
/var/folders/f4/dx7jrt3s0rl_92zv6m32zdc5rjqmy7/T//RtmpPEQ0vy/do
wnloaded_packages

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--
Håvard Rue
he...@r-inla.org

[Helpdesk]

you can also try to do this manually

kw-16659:~ rueh$ curl 'http://inla.r-inla-download.org/R/testing/bin/macosx/contrib/4.1/INLA_21.07.10-1.tgz' -o INLA.tgz

% Total % Received % Xferd Average Speed Time Time Time Current

Dload Upload Total Spent Left Speed

100 55.2M 100 55.2M 0 0 7670k 0 0:00:07 0:00:07 --:--:-- 12.2M

kw-16659:~ rueh$ ls -l INLA.tgz

-rw-r--r-- 1 rueh KAUST\Domain Users 57909828 Aug 11 00:03 INLA.tgz

kw-16659:~ rueh$ R --vanilla CMD INSTALL INLA.tgz

* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’

* installing *binary* package ‘INLA’ ...

* DONE (INLA)

kw-16659:~ rueh$