R-inla discussion group

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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to help@r-inla.org. You are of'course free to comment on questions from others as well.

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alessandro dalla bona, Helpdesk (Haavard Rue)3

Dec 3

Parallelization in INLA

Thank you very much! Il giorno sab 3 dic 2022 alle 09:16 Helpdesk (Haavard Rue) <help@r-inla.org

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Parallelization in INLA

Thank you very much! Il giorno sab 3 dic 2022 alle 09:16 Helpdesk (Haavard Rue) <help@r-inla.org

Dec 3

Nov 30

Model selection for 'island' spatial problem

I am struggling to find INLA example code to addess the problem I am trying to solve. I have a

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Model selection for 'island' spatial problem

I am struggling to find INLA example code to addess the problem I am trying to solve. I have a

Nov 30

Tim Meehan, Finn Lindgren3

Nov 28

Neighborhood graph given lots of NA values

Awesome, Finn, thanks! On Monday, November 28, 2022 at 4:19:34 PM UTC-7 finn.l...@gmail.com wrote: Hi

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Neighborhood graph given lots of NA values

Awesome, Finn, thanks! On Monday, November 28, 2022 at 4:19:34 PM UTC-7 finn.l...@gmail.com wrote: Hi

Nov 28

Yalemzewod Gelaw, Helpdesk (Haavard Rue)2

Nov 28

Model selection

I would also add https://arxiv.org/abs/2210.04482 to the list... On Mon, 2022-11-28 at 18:17 +0800,

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Model selection

I would also add https://arxiv.org/abs/2210.04482 to the list... On Mon, 2022-11-28 at 18:17 +0800,

Nov 28

Taiwo Aderemi (Di-Root), Helpdesk (Haavard Rue)2

Nov 28

exceedance probabilities

by default marginals.fitted.values are NULL as often the output is huge. you can request it setting

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exceedance probabilities

by default marginals.fitted.values are NULL as often the output is huge. you can request it setting

Nov 28

Doori Oh, … Helpdesk (Haavard Rue)4

Nov 28

INLA.Data1: Gaussian weight[13361] = 0 is void

Gaussian likelihood for the data y_i has precision \tau, say, which is the precision parameter in the

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INLA.Data1: Gaussian weight[13361] = 0 is void

Gaussian likelihood for the data y_i has precision \tau, say, which is the precision parameter in the

Nov 28

FredrikLAa, Helpdesk (Haavard Rue)2

Nov 28

Firth‘s penalization for logistic regression for rare events

in short, no. should be easy to do this through some other packages though On Sun, 2022-11-27 at 05:

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Firth‘s penalization for logistic regression for rare events

in short, no. should be easy to do this through some other packages though On Sun, 2022-11-27 at 05:

Nov 28

Bas Matsuura, Havard Rue2

Nov 25

PARDISO License Academic Free

Yes, use r4.2 and the most recent y testing version. Use university email Follow instructions on inla

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PARDISO License Academic Free

Yes, use r4.2 and the most recent y testing version. Use university email Follow instructions on inla

Nov 25

Hazel Paola Quesada Leitòn, Helpdesk (Haavard Rue)2

Nov 25

Intraclass correlation coeficient

from what I understand, the data are conditional independent, hence your ICC need to be defined on

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Intraclass correlation coeficient

from what I understand, the data are conditional independent, hence your ICC need to be defined on

Nov 25

Sam Royston, Havard Rue2

Nov 25

Sum-to-zero constraints across effects

as of now, linear constraints are only within each f() one way to bypass this, approximately, is to

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Sum-to-zero constraints across effects

as of now, linear constraints are only within each f() one way to bypass this, approximately, is to

Nov 25

Nov 24

Little Known Facts About Online Market.

Lots of people question how Google rankings operate. So right before we get into the particular

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Little Known Facts About Online Market.

Lots of people question how Google rankings operate. So right before we get into the particular

Nov 24

ChooChoo JC, Helpdesk (Haavard Rue)2

Nov 24

Posterior sample interaction terms

I do not think the 'selection' argument in posterior.sample was that great of an idea as it

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Posterior sample interaction terms

I do not think the 'selection' argument in posterior.sample was that great of an idea as it

Nov 24

alessandro dalla bona, Finn Lindgren3

Nov 23

Problem with different coordinates

Thank you very much! I will try, I suspect that the priors are not reasonable. The expansions of

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Problem with different coordinates

Thank you very much! I will try, I suspect that the priors are not reasonable. The expansions of

Nov 23

Paulo Henrique, Gregor Gorjanc3

Nov 22

Genomic selection

Hi Paoulo, You can fit ridge regression model on marker covariates (aka SNP-BLUP in genomics) by

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Genomic selection

Hi Paoulo, You can fit ridge regression model on marker covariates (aka SNP-BLUP in genomics) by

Nov 22

whee...@gmail.com, INLA help4

Nov 18

Error running inla on HPC cluster

Compile up R 4.2? It's straight forward Sent from Outlook for iOS From: Katherine Wheeler-Martin

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Error running inla on HPC cluster

Compile up R 4.2? It's straight forward Sent from Outlook for iOS From: Katherine Wheeler-Martin

Nov 18

alessandro dalla bona, … Helpdesk (Haavard Rue)4

Nov 17

inla.zmarginal for inlabru object

Oh I'm so sorry, I tried before and it didn't work, now I specified the argumenst in the inla

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inla.zmarginal for inlabru object

Oh I'm so sorry, I tried before and it didn't work, now I specified the argumenst in the inla

Nov 17

Eurico Noleto, Helpdesk (Haavard Rue)2

Nov 16

The only thing you need to do, is to register to get the license, with inla.pardiso() and follow the

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The only thing you need to do, is to register to get the license, with inla.pardiso() and follow the

Nov 16

Kyle Manning, Finn Lindgren2

Nov 15

Grouped splines

The f(value, weights, …) syntax means Effect[i] = weights[i] * latent(value[i]) In the model=“iid”

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Grouped splines

The f(value, weights, …) syntax means Effect[i] = weights[i] * latent(value[i]) In the model=“iid”

Nov 15

Mcewen Khundi, … Elias T. Krainski4

Nov 15

How to take the difference of marginals.fitted.values from two

Thanks both for the answers. About the joint model approach, what would be the best approach to

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How to take the difference of marginals.fitted.values from two

Thanks both for the answers. About the joint model approach, what would be the best approach to

Nov 15

Scott Foster, … Elias T. Krainski4

Nov 15

Preferential sampling with both random and fixed effects

Hi, In order to copy the entire linear predictor, you can define a "fake zero" observations

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Preferential sampling with both random and fixed effects

Hi, In order to copy the entire linear predictor, you can define a "fake zero" observations

Nov 15

Eurico Noleto, Helpdesk (Haavard Rue)2

Nov 14

Error inla.mode=experimental

1. can you update to the most recent testing version and retry? inla.update(testing=TRUE) 2. if that

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Error inla.mode=experimental

1. can you update to the most recent testing version and retry? inla.update(testing=TRUE) 2. if that

Nov 14

James Dalgleish, Helpdesk (Haavard Rue)2

Nov 14

Error using SPDEToy, following example from Blangardio and Cameletti text, p.206

it helps if you spell 'formula' correct ;-) On Fri, 2022-11-11 at 03:39 -0800, James

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Error using SPDEToy, following example from Blangardio and Cameletti text, p.206

it helps if you spell 'formula' correct ;-) On Fri, 2022-11-11 at 03:39 -0800, James

Nov 14

Noah Silverman, … Finn Lindgren8

Nov 11

INLA for Skewed Distribution

Yes. That's how virtually all regression models work (it's not an inla specific thing) Finn

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INLA for Skewed Distribution

Yes. That's how virtually all regression models work (it's not an inla specific thing) Finn

Nov 11

ChooChoo JC, INLA help2

Nov 10

Estimate for proportional odds model and logistic regression model

In standard logistic regression everything is as normal Sent from Outlook for iOS From: r-inla-

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Estimate for proportional odds model and logistic regression model

In standard logistic regression everything is as normal Sent from Outlook for iOS From: r-inla-

Nov 10

Nov 10

Did I fit my gamma and log-link function model correctly ?

Dear INLA-users, First I would like to thanks the people that create and interact on this forum! Soo

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Did I fit my gamma and log-link function model correctly ?

Dear INLA-users, First I would like to thanks the people that create and interact on this forum! Soo

Nov 10

alessandro dalla bona, Finn Lindgren6

Nov 9

Future prediction

The ?inlabru::component help text may help a bit, as well as https://inlabru-org.github.io/inlabru/

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Future prediction

The ?inlabru::component help text may help a bit, as well as https://inlabru-org.github.io/inlabru/

Nov 9

michael, … Finn Lindgren14

Nov 9

Boundary constraints in spatial models

Hi Finn, I see! It is not trivial (to me at least: ) ) to get a thorough understanding of the inner

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Boundary constraints in spatial models

Hi Finn, I see! It is not trivial (to me at least: ) ) to get a thorough understanding of the inner

Nov 9

INLA help, newer6

Nov 8

Re: [r-inla] problems with bym2

thanks for your kind reply.The problem has been solved with your help. But I have to delete this post

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Re: [r-inla] problems with bym2

thanks for your kind reply.The problem has been solved with your help. But I have to delete this post

Nov 8

Helpdesk (Haavard Rue), … newer6

Nov 8

Re: [r-inla] spatial modeling with islands

thanks for your kind reply.The problem has been solved with your help. But I have to delete this post

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Re: [r-inla] spatial modeling with islands

thanks for your kind reply.The problem has been solved with your help. But I have to delete this post

Nov 8

Nov 8

Problem with the use of inla.make.lincombs in Linear mixed model

Dear INLA Developers, I am simply coding a linear mixed model with INLA (see the code below).

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Problem with the use of inla.make.lincombs in Linear mixed model

Dear INLA Developers, I am simply coding a linear mixed model with INLA (see the code below).

Nov 8

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