R-inla discussion group

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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to help@r-inla.org. You are of'course free to comment on questions from others as well.

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Seth Flaxman, … Finn Lindgren4

Oct 3

inlabru: "You might want to consider to setting ``control.predictor=list(link=...)''"

Control.predictor has to be given as options=list(control.predictor=…) in bru() calls. But the needed

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inlabru: "You might want to consider to setting ``control.predictor=list(link=...)''"

Control.predictor has to be given as options=list(control.predictor=…) in bru() calls. But the needed

Oct 3

shicx, Helpdesk (Haavard Rue)3

Oct 3

A question about the INLA crashed

Thanks for your reply, can I send you my data and code via email? thanks again！在2023年9月27日星期三 UTC+8

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A question about the INLA crashed

Thanks for your reply, can I send you my data and code via email? thanks again！在2023年9月27日星期三 UTC+8

Oct 3

suzy, Virgilio Gómez-Rubio2

Oct 3

Hi, Is there an explanation for the slm effect of the model in this picture? For example, do darker

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Hi, Is there an explanation for the slm effect of the model in this picture? For example, do darker

Oct 3

newer, Helpdesk (Haavard Rue)3

Oct 3

problem of SPDE and NS combined model prediction

thanks for your kind answer. I used the “rw1” model before, but i do not know how to explain the

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problem of SPDE and NS combined model prediction

thanks for your kind answer. I used the “rw1” model before, but i do not know how to explain the

Oct 3

Yessika Adelwin Natalia

Oct 2

Joint model: compund symmtery and correlated random effects

Dear INLA community I want to fit a joint Binomial-Poisson areal model with this definition : r_ij ~

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Joint model: compund symmtery and correlated random effects

Dear INLA community I want to fit a joint Binomial-Poisson areal model with this definition : r_ij ~

Oct 2

Yibeltal Aytenew

Oct 2

To R=inla disscussion

when i use this code the error will be get but in this code for exponential,weibull,loglormaland

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To R=inla disscussion

when i use this code the error will be get but in this code for exponential,weibull,loglormaland

Oct 2

Yibeltal Aytenew

Oct 2

loglogistic.model <- inla(formula, data = mydata, family = "loglogistic.surv", control.

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loglogistic.model <- inla(formula, data = mydata, family = "loglogistic.surv", control.

Oct 2

TheCorinna1994, Finn Lindgren5

Oct 2

bgev prediction

Thank you very much Finn! On Tuesday, 26 September 2023 at 15:41:52 UTC+2 Finn Lindgren wrote: Hi, I

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bgev prediction

Thank you very much Finn! On Tuesday, 26 September 2023 at 15:41:52 UTC+2 Finn Lindgren wrote: Hi, I

Oct 2

Getachew Dejene, Helpdesk (Haavard Rue)2

Sep 29

Expected values

The expected counts in area i are calculated as Expected_i = Population_i * SumCasesAllAreas/

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Expected values

The expected counts in area i are calculated as Expected_i = Population_i * SumCasesAllAreas/

Sep 29

Yessika Adelwin Natalia, Denis Rustand5

Sep 29

Joint model: shared fixed effect with categorical covariate

Hi Denis Thank you very much for your explanation and the code. It works like a charm. :) Kind

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Joint model: shared fixed effect with categorical covariate

Hi Denis Thank you very much for your explanation and the code. It works like a charm. :) Kind

Sep 29

Sébastien Coube, Finn Lindgren3

Sep 28

Is it possible to get an anisotropic Matérn model with INLA ?

Hello Finn, Thank you for your answer ! As for anisotropy parametrization, I am a big fan of matrix

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Is it possible to get an anisotropic Matérn model with INLA ?

Hello Finn, Thank you for your answer ! As for anisotropy parametrization, I am a big fan of matrix

Sep 28

JUAN MIGUEL REQUENA MULLOR, Finn Lindgren2

Sep 28

Hi, No the dirinla package don't support spatial models; it only supports fixed effects and plain

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Hi, No the dirinla package don't support spatial models; it only supports fixed effects and plain

Sep 28

Sébastien Coube

Sep 28

How does the number of high-level parameters impact the cost of INLA ?

This question is completely unrelated with the one I just posted, but it is an interrogation I've

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How does the number of high-level parameters impact the cost of INLA ?

This question is completely unrelated with the one I just posted, but it is an interrogation I've

Sep 28

Sep 28

Installation of INLA in the server

Usually this is a normal using R 4.3 After install you might need to install other binaries with inla

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Installation of INLA in the server

Usually this is a normal using R 4.3 After install you might need to install other binaries with inla

Sep 28

Louis Georgi, Finn Lindgren12

Sep 27

inla.stack Error: Mismatching row sizes

Hallo Finn, Yes! Thank you! mesh$n <- nrow(mesh$loc) solved the problem! "original"

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inla.stack Error: Mismatching row sizes

Hallo Finn, Yes! Thank you! mesh$n <- nrow(mesh$loc) solved the problem! "original"

Sep 27

Emma Skarstein, … Denis Rustand7

Sep 27

INLA survival model formulation using inla.stack and multiple likelihoods

Thank you all for these comments! I'm looking forward to seeing the future INLA interface. I did

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INLA survival model formulation using inla.stack and multiple likelihoods

Thank you all for these comments! I'm looking forward to seeing the future INLA interface. I did

Sep 27

Fabio Zottele, … Helpdesk (Haavard Rue)3

Sep 27

Spatotemporal dataset creation

using the randomfields package is ok for simulating data. the books at r-inla.org (available on www)

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Spatotemporal dataset creation

using the randomfields package is ok for simulating data. the books at r-inla.org (available on www)

Sep 27

Charlotte Taelman, … Helpdesk (Haavard Rue)12

Sep 27

cenpoisson requirements

oops, the 'cenpoisson' is cencored in the way that observations in the interval [L,H] is

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cenpoisson requirements

oops, the 'cenpoisson' is cencored in the way that observations in the interval [L,H] is

Sep 27

INLA help, … Tim Meehan4

Sep 26

Re: [r-inla] Complex models work - simple models crash

Thanks, Finn! On Tuesday, September 26, 2023 at 11:45:01 AM UTC-6 Finn Lindgren wrote: For the bru

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Re: [r-inla] Complex models work - simple models crash

Thanks, Finn! On Tuesday, September 26, 2023 at 11:45:01 AM UTC-6 Finn Lindgren wrote: For the bru

Sep 26

Sean Anderson, Finn Lindgren4

Sep 26

fm_rcdt_2d_inla vs. inla.mesh.create differences

I'm not sure why default “n” seems to have changed; I'll look into it. Finn On 26 Sep 2023,

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fm_rcdt_2d_inla vs. inla.mesh.create differences

I'm not sure why default “n” seems to have changed; I'll look into it. Finn On 26 Sep 2023,

Sep 26

suzy, Havard Rue2

Sep 23

f(id, initial = -10, fixed = T)

This is a iid model with fixed precision =exp(-10). Essentially a uniform distribution indexed by

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f(id, initial = -10, fixed = T)

This is a iid model with fixed precision =exp(-10). Essentially a uniform distribution indexed by

Sep 23

Erin B, Finn Lindgren17

Sep 22

LGCP in INLA vs inlabru

crs info is consistent across the board.. I have tried multiple combinations of priors for pcmatern

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LGCP in INLA vs inlabru

crs info is consistent across the board.. I have tried multiple combinations of priors for pcmatern

Sep 22

Eke Arua, Helpdesk (Haavard Rue)4

Sep 20

vb.correction issues

Thank you so much for your prompt response. The model works for the first time with no warning or

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vb.correction issues

Thank you so much for your prompt response. The model works for the first time with no warning or

Sep 20

Annabel Webb, Janet Van Niekerk2

Sep 20

Joint models in INLA using "current value" parameterisation

Hi Annabel, There is now a new package INLAjoint that is specifically for fitting joint models

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Joint models in INLA using "current value" parameterisation

Hi Annabel, There is now a new package INLAjoint that is specifically for fitting joint models

Sep 20

Peter Mair, Finn Lindgren2

Sep 18

Prediction at validation stations

Hi Peter, your model formula has two conflicting latent component definitions. If you wanted a model

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Prediction at validation stations

Hi Peter, your model formula has two conflicting latent component definitions. If you wanted a model

Sep 18

Oscar Key, … Helpdesk (Haavard Rue)8

Sep 16

guidance for the generic model

these implementations are mainly to access the same internals as the inla-program, hence there is

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guidance for the generic model

these implementations are mainly to access the same internals as the inla-program, hence there is

Sep 16

paradin...@gmail.com, Håvard Rue3

Sep 16

qqplot for tweedie model

Thank you Havard for the response. Yes, I found my way in the simple “just-intercept” sort of

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qqplot for tweedie model

Thank you Havard for the response. Yes, I found my way in the simple “just-intercept” sort of

Sep 16

Peter Mair, Håvard Rue3

Sep 15

Define own "family" and multivariate marginal distributions

Multivariate likelihoods could be possible and some are, like inla.doc("gaussianjw") and of

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Define own "family" and multivariate marginal distributions

Multivariate likelihoods could be possible and some are, like inla.doc("gaussianjw") and of

Sep 15

just one, Helpdesk (Haavard Rue)2

Sep 15

Binomial data assumes integer response, but yours are not, like 17.01 as reported in the error msg On

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Binomial data assumes integer response, but yours are not, like 17.01 as reported in the error msg On

Sep 15

Greta Panunzi, Finn Lindgren7

Sep 14

Issues with eval_spatial

Thank you very much. There might be some issues with the data I'm using in the model. I'll

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Issues with eval_spatial

Thank you very much. There might be some issues with the data I'm using in the model. I'll

Sep 14

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