R-inla discussion group

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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to help@r-inla.org. You are of'course free to comment on questions from others as well.

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Jun 24

Question on the underestimation of correlation coefficient rho in the iid2d model

I am recently working on a model with a latent effect, which follows an iid2d model and I am getting

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Question on the underestimation of correlation coefficient rho in the iid2d model

I am recently working on a model with a latent effect, which follows an iid2d model and I am getting

Jun 24

pav, Elias T. Krainski2

Jun 24

another knmodels question: ar1 specification possible?

Hi, The issue with AA being singular happens at the current INLA version when using PARDISO. For now,

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another knmodels question: ar1 specification possible?

Hi, The issue with AA being singular happens at the current INLA version when using PARDISO. For now,

Jun 24

pav, Elias T. Krainski4

Jun 24

inla.knmodels example crashes

Just to complete the story: Elias' note that there was a typo in the specification of tgraph didn

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inla.knmodels example crashes

Just to complete the story: Elias' note that there was a typo in the specification of tgraph didn

Jun 24

pcstiles, Helpdesk2

Jun 24

Joint model crashing - not sure where the error is

the log does not say. I'll have to rerun it here to check, please send R-code and data (or

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Joint model crashing - not sure where the error is

the log does not say. I'll have to rerun it here to check, please send R-code and data (or

Jun 24

simon brewer, Finn Lindgren6

Jun 23

Intercept estimate for SPDE model

Dear Finn Thank you for the quick and detailed response – this is a really helpful explanation. And

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Intercept estimate for SPDE model

Dear Finn Thank you for the quick and detailed response – this is a really helpful explanation. And

Jun 23

Tahmid Towsif Ahmed, Helpdesk2

Jun 22

Starting Guideline

see the book section at r-inla.org, two recent ones you can also read online with code On Tue, 2021-

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Starting Guideline

see the book section at r-inla.org, two recent ones you can also read online with code On Tue, 2021-

Jun 22

lisa C, Helpdesk3

Jun 22

spatial random slope

Thanks very much Havard for the reply and information. that helped a lot! On Monday, June 14, 2021 at

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spatial random slope

Thanks very much Havard for the reply and information. that helped a lot! On Monday, June 14, 2021 at

Jun 22

Brittany Hayward-Brown, Helpdesk2

Jun 22

error in predicting - control.inla$lincomb.derived.only disabled

On Mon, 2021-06-21 at 22:43 -0700, Brittany Hayward-Brown wrote: > control.inla = list(lincomb.

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error in predicting - control.inla$lincomb.derived.only disabled

On Mon, 2021-06-21 at 22:43 -0700, Brittany Hayward-Brown wrote: > control.inla = list(lincomb.

Jun 22

Subramanian Swaminathan, Helpdesk17

Jun 21

Hi Rue, I am just refering to my earlier mail ir of modifying script for running type II-IV

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Hi Rue, I am just refering to my earlier mail ir of modifying script for running type II-IV

Jun 21

Ania Kawiecki, Helpdesk2

Jun 19

Error in fmesher.read(prefix, "manifold") :

try to install R-4.0 instead of the R-3.6. I guess you're on the Intel and not the M1, right ? If

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Error in fmesher.read(prefix, "manifold") :

try to install R-4.0 instead of the R-3.6. I guess you're on the Intel and not the M1, right ? If

Jun 19

Jun 19

How to interpret / validate cox PH model

This is a follow-up to a previous post - hope I'm not repeating myself... I've been trying to

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How to interpret / validate cox PH model

This is a follow-up to a previous post - hope I'm not repeating myself... I've been trying to

Jun 19

Theresa Smith, … Helpdesk14

Jun 18

setting time limit for inla

that's likely there is now a proper way to do this anyway, the attached file shows how this can

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setting time limit for inla

that's likely there is now a proper way to do this anyway, the attached file shows how this can

Jun 18

Michael Smith, Finn Lindgren12

Jun 17

Fitting lgcp: error "arguments imply differing number of rows"

Re-converting to Pixels from Points sounds like the best option here. The transformation from m to km

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Fitting lgcp: error "arguments imply differing number of rows"

Re-converting to Pixels from Points sounds like the best option here. The transformation from m to km

Jun 17

Hossein Baghishani, Finn Lindgren4

Jun 14

Constructing a reasonable mesh for road traffic crashes

People have been using and working on roadwork network Poisson point process models, but I'm not

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Constructing a reasonable mesh for road traffic crashes

People have been using and working on roadwork network Poisson point process models, but I'm not

Jun 14

Qing Su, Virgilio Gómez-Rubio2

Jun 14

book.spatial.correlation

Hi, Dear INLA-team, I could't find the file spde-book-functions.R from the website of this book.

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book.spatial.correlation

Hi, Dear INLA-team, I could't find the file spde-book-functions.R from the website of this book.

Jun 14

Jun 14

object 'Intercept" not found error message in inlasloo

hi all, whenever i try to validate my models through INLAutils package and i run "inlasloo'

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object 'Intercept" not found error message in inlasloo

hi all, whenever i try to validate my models through INLAutils package and i run "inlasloo'

Jun 14

Duncan McPherson, … Helpdesk13

Jun 12

binomial models with varying, including zero, number of trials

its just a matter of inconsistent coding, in that case the likelihood is just 1 and does not inform

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binomial models with varying, including zero, number of trials

its just a matter of inconsistent coding, in that case the likelihood is just 1 and does not inform

Jun 12

Rolando Gonzales

Jun 12

R-INLA and COVID-19 modelling

Dear all, For anyone interested in spatio-temporal modelling of COVID-19, I would like to share a

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R-INLA and COVID-19 modelling

Dear all, For anyone interested in spatio-temporal modelling of COVID-19, I would like to share a

Jun 12

Jun 10

Goodness of fit tests

Hi all, I want to compare the models for the different species. The problem in sum(log(CPO)) is that

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Goodness of fit tests

Hi all, I want to compare the models for the different species. The problem in sum(log(CPO)) is that

Jun 10

Sabira Smaili, … Helpdesk6

Jun 10

Variance explained by the spatially structured component

https://journals.sagepub.com/doi/abs/10.1177/0962280216660421?journalCode=smma its also there on

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Variance explained by the spatially structured component

https://journals.sagepub.com/doi/abs/10.1177/0962280216660421?journalCode=smma its also there on

Jun 10

Timo Staeudle, Helpdesk4

Jun 10

Error fitting simple models with rw1 component using pardiso solver

The suggested solution by Havard Rue to adjust the random effect f(Year, model = 'rw1', scale

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Error fitting simple models with rw1 component using pardiso solver

The suggested solution by Havard Rue to adjust the random effect f(Year, model = 'rw1', scale

Jun 10

John Molitor, Helpdesk3

Jun 10

zero-inflated gaussian

Thank you. J On Wednesday, June 9, 2021 at 8:30:13 PM UTC-7 he...@r-inla.org wrote: yes, do inla.doc(

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zero-inflated gaussian

Thank you. J On Wednesday, June 9, 2021 at 8:30:13 PM UTC-7 he...@r-inla.org wrote: yes, do inla.doc(

Jun 10

Stefan Siegert, Helpdesk5

Jun 9

Equation for space-time model

Fantastic! Thank you. On Wednesday, 9 June 2021 at 17:16:42 UTC+1 he...@r-inla.org wrote: math: its

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Equation for space-time model

Fantastic! Thank you. On Wednesday, 9 June 2021 at 17:16:42 UTC+1 he...@r-inla.org wrote: math: its

Jun 9

pcstiles, Helpdesk3

Jun 8

Modelling single value based on two likelihoods

Thank you for pointing me in the right direction! I will read through that section of the book and

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Modelling single value based on two likelihoods

Thank you for pointing me in the right direction! I will read through that section of the book and

Jun 8

Dan, Elias T. Krainski3

Jun 8

MULTISPECIES MODELLING

Thank you Get Outlook for iOS From: Elias T. Krainski <eliaskrainski@gmail.com> Sent: Wednesday

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MULTISPECIES MODELLING

Thank you Get Outlook for iOS From: Elias T. Krainski <eliaskrainski@gmail.com> Sent: Wednesday

Jun 8

Dan, Elias T. Krainski3

Jun 8

Overfitting in temporal model

Hi Elisa, Yes, this is a segmented regression model. Get Outlook for iOS From: Elias T. Krainski <

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Overfitting in temporal model

Hi Elisa, Yes, this is a segmented regression model. Get Outlook for iOS From: Elias T. Krainski <

Jun 8

guna...@umn.edu, Helpdesk2

Jun 8

Explained Variance

that sounds not possible. it depends likely on how you computed it On Tue, 2021-06-08 at 03:53 -0700,

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Explained Variance

that sounds not possible. it depends likely on how you computed it On Tue, 2021-06-08 at 03:53 -0700,

Jun 8

Thomas F Johnson, Helpdesk6

Jun 8

Correlated grouping term in a random slope model

Amazing, thank you for the rapid and excellent support! On Monday, 7 June 2021 at 21:01:59 UTC+1 he..

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Correlated grouping term in a random slope model

Amazing, thank you for the rapid and excellent support! On Monday, 7 June 2021 at 21:01:59 UTC+1 he..

Jun 8

James Ramsey, … Balaji Raman9

Jun 5

"dyld: Library not loaded" error when trying to run INLA

Got it. It works now. Thanks On Sat, Jun 5, 2021, 6:06 PM Balaji Raman <balajiraman82@gmail.com

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"dyld: Library not loaded" error when trying to run INLA

Got it. It works now. Thanks On Sat, Jun 5, 2021, 6:06 PM Balaji Raman <balajiraman82@gmail.com

Jun 5

Michael Smith, … Helpdesk7

Jun 4

Error specifying Cox PH survival model

Many thanks both, I got it working with inla.coxph (using a lattice instead of a mesh since I had a

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Error specifying Cox PH survival model

Many thanks both, I got it working with inla.coxph (using a lattice instead of a mesh since I had a

Jun 4

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