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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to help@r-inla.org. You are of'course free to comment on questions from others as well.

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Dominique Soudant, Helpdesk (Haavard Rue)4

Mar 20

[time series] All pit=0 with lognormal surv

r <- inla(Y ~ 1 + x, data = list(Y=Y, x=x), family = "exponentialsurv", verbose = TRUE,

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[time series] All pit=0 with lognormal surv

r <- inla(Y ~ 1 + x, data = list(Y=Y, x=x), family = "exponentialsurv", verbose = TRUE,

Mar 20

Bram, … Helpdesk (Haavard Rue)9

Mar 20

assessing model performance

Hi Harvard and Finn, Thanks! I just realized that I made a mistake in my manual approach. The

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assessing model performance

Hi Harvard and Finn, Thanks! I just realized that I made a mistake in my manual approach. The

Mar 20

Satoshi Aoki, Helpdesk (Haavard Rue)3

Mar 18

Role of "phi" in multinomial logit models for spatial random effect

Dear Rue, Thanks for your answer! Satoshi Aoki 2025年3月18日火曜日 16:50:19 UTC+9 Helpdesk (Haavard Rue):

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Role of "phi" in multinomial logit models for spatial random effect

Dear Rue, Thanks for your answer! Satoshi Aoki 2025年3月18日火曜日 16:50:19 UTC+9 Helpdesk (Haavard Rue):

Mar 18

jdse...@gmail.com, Finn Lindgren3

Mar 15

LGCP analysis of Islands. Mesh creation

Hi, I did a quick check of the code, and the problem is that you're giving a list of spde model

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LGCP analysis of Islands. Mesh creation

Hi, I did a quick check of the code, and the problem is that you're giving a list of spde model

Mar 15

Joo Ryu, Helpdesk (Haavard Rue)2

Mar 15

Questions about Delta/Hurdle Gamma model

question about use of sdmTMB should be sent to their discussion forum. On Fri, 2025-03-14 at 18:34 -

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Questions about Delta/Hurdle Gamma model

question about use of sdmTMB should be sent to their discussion forum. On Fri, 2025-03-14 at 18:34 -

Mar 15

Ruby Ji, Finn Lindgren2

Mar 14

Separate SPDE models for two regions

Hi, the meshes should have sufficient resolution for the spatial variability structure of the latent

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Separate SPDE models for two regions

Hi, the meshes should have sufficient resolution for the spatial variability structure of the latent

Mar 14

Mar 14

Adding a smoother affects model prediction study

Hi folks, I hope you're all keeping well. I'm running a model of skate presence (very zero-

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Adding a smoother affects model prediction study

Hi folks, I hope you're all keeping well. I'm running a model of skate presence (very zero-

Mar 14

Matteo Marcantonio, … Helpdesk (Haavard Rue)4

Mar 12

Barrier model crash

the testing version of yesterday should solve it without the workaround from Elias On Wed, 2025-03-12

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Barrier model crash

the testing version of yesterday should solve it without the workaround from Elias On Wed, 2025-03-12

Mar 12

Moritz Klaassen, Finn Lindgren2

Mar 12

spatiotemporal model with dynamic covariates

Hi, how to handle spatio-temporally variable covariates depends on the storage format, and will also

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spatiotemporal model with dynamic covariates

Hi, how to handle spatio-temporally variable covariates depends on the storage format, and will also

Mar 12

Julien, … Aminath Shausan16

Mar 11

coding random slope model (with or without an uncorrelated random intercept)

Thank you Håvard Rue for the quick reply. I am not sure how to do this part: you can change the '

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coding random slope model (with or without an uncorrelated random intercept)

Thank you Håvard Rue for the quick reply. I am not sure how to do this part: you can change the '

Mar 11

Sophie, Finn Lindgren5

Mar 11

Generating a large mesh with holes - performance issues?

Whether polygons are treated as holes or as "inverted holes" is determined by the winding

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Generating a large mesh with holes - performance issues?

Whether polygons are treated as holes or as "inverted holes" is determined by the winding

Mar 11

Zihan Xie, … Helpdesk (Haavard Rue)15

Mar 11

How do I install INLA in an Ubuntu Rstudio instance on a server?

I guess you run out of memory. make sure you're using R-4.4 and the most recent testing version

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How do I install INLA in an Ubuntu Rstudio instance on a server?

I guess you run out of memory. make sure you're using R-4.4 and the most recent testing version

Mar 11

Lucas Godoy, … Elias T. Krainski5

Mar 8

Data fusion from INLA to inlabru

Great! Well done. On Fri, 7 Mar 2025, 22:34 Lucas Godoy, <lucasda...@gmail.com> wrote: Hi

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Data fusion from INLA to inlabru

Great! Well done. On Fri, 7 Mar 2025, 22:34 Lucas Godoy, <lucasda...@gmail.com> wrote: Hi

Mar 8

Molly Cliff, Helpdesk (Haavard Rue)2

Mar 7

No DIC for zeroinflatedbinomial model?

You can use this model instead inla.doc("0poisson") its a better implementation and allow

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No DIC for zeroinflatedbinomial model?

You can use this model instead inla.doc("0poisson") its a better implementation and allow

Mar 7

Carrie Ann Adams, Finn Lindgren2

Mar 4

2^31-1 byte limit

Hi, I think the 2^31 message may be due to a bug in the error reporting code and that the actual

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2^31-1 byte limit

Hi, I think the 2^31 message may be due to a bug in the error reporting code and that the actual

Mar 4

Drew N, Denis Rustand3

Mar 3

Help troubleshoot multi-state model

Hi Denis, Thank you so much for your reply! This was all very helpful! Best, Andrew On Saturday,

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Help troubleshoot multi-state model

Hi Denis, Thank you so much for your reply! This was all very helpful! Best, Andrew On Saturday,

Mar 3

Nafsika Antoniadou

Feb 27

Scale parameter in GP distribution

Hello, I am working on modeling extreme events using the Generalized Pareto (GP) distribution in INLA

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Scale parameter in GP distribution

Hello, I am working on modeling extreme events using the Generalized Pareto (GP) distribution in INLA

Feb 27

Håvard Rue, … rujia bi5

Feb 27

Re: [r-inla] Double hurdle model

Thank you! These are really helpful! > On Feb 27, 2025, at 3:06 AM, Finn Lindgren <finn.

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Re: [r-inla] Double hurdle model

Thank you! These are really helpful! > On Feb 27, 2025, at 3:06 AM, Finn Lindgren <finn.

Feb 27

Nafsika Antoniadou, Helpdesk (Haavard Rue)2

Feb 26

Generalized Pareto distribution

inla.list.models() inla.doc("gp") On Wed, 2025-02-26 at 09:06 -0800, Nafsika Antoniadou

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Generalized Pareto distribution

inla.list.models() inla.doc("gp") On Wed, 2025-02-26 at 09:06 -0800, Nafsika Antoniadou

Feb 26

Xiaorui Li, Håvard Rue2

Feb 25

Failed to install the INLA package

increase the timeout, options(timeout=999999) On Tue, 2025-02-25 at 01:10 -0800, Xiaorui Li wrote:

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Failed to install the INLA package

increase the timeout, options(timeout=999999) On Tue, 2025-02-25 at 01:10 -0800, Xiaorui Li wrote:

Feb 25

Leonardo Cefalo, Håvard Rue3

Feb 24

Manual implementation of sparse BYM2 model - how to set latent effect of size 2*n

here, there is one data point while the size of 'idx' is 10 > r=inla(y ~ -1 + f(idx, model

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Manual implementation of sparse BYM2 model - how to set latent effect of size 2*n

here, there is one data point while the size of 'idx' is 10 > r=inla(y ~ -1 + f(idx, model

Feb 24

Zirou Zhou, Håvard Rue2

Feb 24

How to do the BMA using inla for a beta regression and binomial regression

you can weight them using the marginal likelihood, if you use proper priors On Mon, 2025-02-24 at 08:

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How to do the BMA using inla for a beta regression and binomial regression

you can weight them using the marginal likelihood, if you use proper priors On Mon, 2025-02-24 at 08:

Feb 24

李晓睿, Helpdesk (Haavard Rue)2

Feb 24

How to install the INLA package?

please make sure to use R-4.4 use the description at www.r-inla.org On Mon, 2025-02-24 at 00:45 -0800

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How to install the INLA package?

please make sure to use R-4.4 use the description at www.r-inla.org On Mon, 2025-02-24 at 00:45 -0800

Feb 24

Feb 21

Questions on INLA CPO

Hi, I try to use leave-out Cross-validation to do the BMA. The CPO for beta regression is not looks

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Questions on INLA CPO

Hi, I try to use leave-out Cross-validation to do the BMA. The CPO for beta regression is not looks

Feb 21

Olivier Supplisson, Helpdesk (Haavard Rue)2

Feb 21

Question about group argument in BYM2 model

I agree, as the 'group' does not know about the special structure for the bym2, and will

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Question about group argument in BYM2 model

I agree, as the 'group' does not know about the special structure for the bym2, and will

Feb 21

Lukas Van Riel, Denis Rustand2

Feb 20

Interval censoring: missing time2

Hi Lukas, Your code seems to run fine for me, are you using the latest GitHub version of the package?

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Interval censoring: missing time2

Hi Lukas, Your code seems to run fine for me, are you using the latest GitHub version of the package?

Feb 20

Ruby Ji, Joaquín Martínez-Minaya2

Feb 20

Composition data with zeros

Hi Ruby, Thank you for your question. In the CoDa context with many zeros, I believe you could

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Composition data with zeros

Hi Ruby, Thank you for your question. In the CoDa context with many zeros, I believe you could

Feb 20

Suzanne Beck, … Finn Lindgren5

Feb 19

Standardized continuous covariates - do I need to reverse for outputs

If the model you want is eta = beta_0 + beta_x * x but you pre-standardise to x_std = (x-mean(x)) /

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Standardized continuous covariates - do I need to reverse for outputs

If the model you want is eta = beta_0 + beta_x * x but you pre-standardise to x_std = (x-mean(x)) /

Feb 19

Nadeesha Jayaweera, … Håvard Rue6

Feb 18

INLA installation issue in HPC

Thanks. I will try. With Best Regards, Nadeesha Jayaweera On Tue, Feb 18, 2025 at 12:14 AM Håvard Rue

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INLA installation issue in HPC

Thanks. I will try. With Best Regards, Nadeesha Jayaweera On Tue, Feb 18, 2025 at 12:14 AM Håvard Rue

Feb 18

Palo, … Helpdesk (Haavard Rue)7

Feb 15

Fitting spatial model with two SPDEs

currently, there is no automatic way of doing this On Thu, 2025-02-13 at 18:28 -0800, lyh...@gmail.

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Fitting spatial model with two SPDEs

currently, there is no automatic way of doing this On Thu, 2025-02-13 at 18:28 -0800, lyh...@gmail.

Feb 15

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