R-inla discussion group

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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to help@r-inla.org. You are of'course free to comment on questions from others as well.

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pcstiles, … Finn Lindgren18

Sep 17

Data stack with more than one A matrix

Ok, that makes sense. Currently, inlabru only supports matrix covariate input in the predictor

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Data stack with more than one A matrix

Ok, that makes sense. Currently, inlabru only supports matrix covariate input in the predictor

Sep 17

Udani, Helpdesk4

Sep 17

Predicted Values

so you want exp(c + z) or exp(Intercept + c + z) ? On Fri, 2021-09-17 at 12:43 +0000, Udani

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Predicted Values

so you want exp(c + z) or exp(Intercept + c + z) ? On Fri, 2021-09-17 at 12:43 +0000, Udani

Sep 17

Will Fincham, Helpdesk4

Sep 17

Meta-analysis style model in INLA

yes, you would need the same priors to get the same results... On Fri, 2021-09-17 at 04:45 -0700,

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Meta-analysis style model in INLA

yes, you would need the same priors to get the same results... On Fri, 2021-09-17 at 04:45 -0700,

Sep 17

dan, Finn Lindgren6

Sep 17

inla.spde2.matern

Great! Thanks for the clarifications. finn.l...@gmail.com schrieb am Donnerstag, 16. September 2021

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inla.spde2.matern

Great! Thanks for the clarifications. finn.l...@gmail.com schrieb am Donnerstag, 16. September 2021

Sep 17

Guillermina Senn, Elias T. Krainski4

Sep 16

Question about Rue et al. 2009 INLA paper

Understood. Thank you Elias! eliask...@gmail.com schrieb am Donnerstag, 16. September 2021 um 14:29:

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Question about Rue et al. 2009 INLA paper

Understood. Thank you Elias! eliask...@gmail.com schrieb am Donnerstag, 16. September 2021 um 14:29:

Sep 16

Michel Valette, Finn Lindgren5

Sep 16

How to define covariates with temporal variations in inlabru?

Dear Finn, I know my case is quite specific and I've spent some time to process my data before

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How to define covariates with temporal variations in inlabru?

Dear Finn, I know my case is quite specific and I've spent some time to process my data before

Sep 16

Scott Burman, … Helpdesk16

Sep 16

grouped rw2, cyclic and scaled?

the fitted values are often, but not always, what is used to predict missing data, like the 'mean

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grouped rw2, cyclic and scaled?

the fitted values are often, but not always, what is used to predict missing data, like the 'mean

Sep 16

Juan Pablo Edwards Molina

Sep 15

teaching example for disease risk map

Hi! Is there some teaching example for modeling the absence/presence of a crop disease along the

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teaching example for disease risk map

Hi! Is there some teaching example for modeling the absence/presence of a crop disease along the

Sep 15

Joseph Hoover, … Subramanian Swaminathan13

Sep 15

Large-scale posterior prediction

Hi, I tried installing the academic version of PARDISO. But I understand that it is available only

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Large-scale posterior prediction

Hi, I tried installing the academic version of PARDISO. But I understand that it is available only

Sep 15

Sep 15

Clarification based on validation

Hai INLA team members I have run a model based on spatial-temporal for training data set (Jan 2013 –

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Clarification based on validation

Hai INLA team members I have run a model based on spatial-temporal for training data set (Jan 2013 –

Sep 15

Renato Morais, … Erin Bryce15

Sep 14

Error in fmesher.read(prefix, "manifold") on Mac

Hi, I'm having a similar problem/error message when I run "inla.mesh.2d". Any help

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Error in fmesher.read(prefix, "manifold") on Mac

Hi, I'm having a similar problem/error message when I run "inla.mesh.2d". Any help

Sep 14

Uma Mahi, Helpdesk4

Sep 14

predicted temporal pattern calculation

the easiest way to check this is to run with control.inla=list(strategy="gaussian", int.

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predicted temporal pattern calculation

the easiest way to check this is to run with control.inla=list(strategy="gaussian", int.

Sep 14

Samuel Muchiri, Helpdesk3

Sep 13

Forecasting vaccination coverage

Hello Håvard. Thanks for your timely response and this has indeed worked and results make sense.

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Forecasting vaccination coverage

Hello Håvard. Thanks for your timely response and this has indeed worked and results make sense.

Sep 13

Shabnam Balamchi, Helpdesk6

Sep 13

Probabilities that mortality rates are greater than a given threshold value

Hi Havard, Thanks a lot for your time and assistance. I will try it with our model and will update

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Probabilities that mortality rates are greater than a given threshold value

Hi Havard, Thanks a lot for your time and assistance. I will try it with our model and will update

Sep 13

林晓凡, Helpdesk2

Sep 12

can't find the results.files

the results are stored in a temporary directory by default that is removed afterwards, less you add

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can't find the results.files

the results are stored in a temporary directory by default that is removed afterwards, less you add

Sep 12

adey micheala Jayne

Sep 10

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Sep 10

Scott Burman, Helpdesk2

Sep 7

Marginals not computed

you're right the msg is a bit confusing, I'll see if I can change that. but here is a recent

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Marginals not computed

you're right the msg is a bit confusing, I'll see if I can change that. but here is a recent

Sep 7

Scott Burman, Helpdesk2

Sep 7

group vs interaction vs n-dimension vs nesting

https://github.com/hrue/r-inla/tree/devel/internal-doc/group On Fri, 2021-09-03 at 16:55 -0700, '

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group vs interaction vs n-dimension vs nesting

https://github.com/hrue/r-inla/tree/devel/internal-doc/group On Fri, 2021-09-03 at 16:55 -0700, '

Sep 7

Thierry Onkelinx, Helpdesk3

Sep 3

marginals for linear predictor

OK. Thanks for the clarification. Adding the extra argument solved my problem. ir. Thierry Onkelinx

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marginals for linear predictor

OK. Thanks for the clarification. Adding the extra argument solved my problem. ir. Thierry Onkelinx

Sep 3

Chengbi Liu, … INLA help7

Sep 2

Confusing map output of INLA when predicting large dataset split in chunks

Thanks, but I am running R 4.1.0. Maybe 4.1.1 is required? On Thursday, September 2, 2021 at 12:39:40

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Confusing map output of INLA when predicting large dataset split in chunks

Thanks, but I am running R 4.1.0. Maybe 4.1.1 is required? On Thursday, September 2, 2021 at 12:39:40

Sep 2

Subramanian Swaminathan, Helpdesk18

Sep 2

Hi Rue, This is just gentle remainder to know whether your team could do the r-script running type I-

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Hi Rue, This is just gentle remainder to know whether your team could do the r-script running type I-

Sep 2

Marina Espinasse, Helpdesk4

Sep 2

Cannot fix negative eigenvalue in Hessian warnings

Sorry, yes I attach the correct data table below, and the other files (grapth and R codes) On

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Cannot fix negative eigenvalue in Hessian warnings

Sorry, yes I attach the correct data table below, and the other files (grapth and R codes) On

Sep 2

Robert Verity, … Finn Lindgren13

Sep 1

Integrate over missing values

From a quick glance, your inlabru version looks OK, but I'll need to revisit this a bit later to

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Integrate over missing values

From a quick glance, your inlabru version looks OK, but I'll need to revisit this a bit later to

Sep 1

felipe...@googlemail.com, Helpdesk2

Sep 1

Issues with model when using offset

It could be this: fitted values will include 'offset' but does not include 'E' > r

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Issues with model when using offset

It could be this: fitted values will include 'offset' but does not include 'E' > r

Sep 1

Rob van Bemmelen, Finn Lindgren2

Sep 1

n and spde.prefix required

Hi, you need to supply your spde model object instead of the string literal 'spde', so f(...,

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n and spde.prefix required

Hi, you need to supply your spde model object instead of the string literal 'spde', so f(...,

Sep 1

Aug 28

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Aug 28

James Ramsey, … INLA help15

Aug 24

"dyld: Library not loaded" error when trying to run INLA

For R-4.1 and M1 use 'testing' not 'stable' — Haavard Rue Helpdesk help@r-inla.org On

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"dyld: Library not loaded" error when trying to run INLA

For R-4.1 and M1 use 'testing' not 'stable' — Haavard Rue Helpdesk help@r-inla.org On

Aug 24

Richard Bailey, … Gregor Gorjanc8

Aug 24

Phylogenetic comparative analysis with INLA

Thanks for all your help Gregor. It looks like I've found a model that works slightly better than

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Phylogenetic comparative analysis with INLA

Thanks for all your help Gregor. It looks like I've found a model that works slightly better than

Aug 24

Marina Espinasse, Helpdesk3

Aug 24

Long running times of INLA models

add option inla(...., verbose=TRUE) to see output. Run on Mac or Linux and use the PARDISO library,

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Long running times of INLA models

add option inla(...., verbose=TRUE) to see output. Run on Mac or Linux and use the PARDISO library,

Aug 24

Eric, Finn Lindgren3

Aug 23

different ways of extracting inlabru spatial parameters

Hi, I'm not sure what the size of your domain is, or what settings you used for the prior, but

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different ways of extracting inlabru spatial parameters

Hi, I'm not sure what the size of your domain is, or what settings you used for the prior, but

Aug 23

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