R-inla discussion group

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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to help@r-inla.org. You are of'course free to comment on questions from others as well.

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Alok Bohara, … Denis Rustand5

3:19 AM

Can INlA doJoint likelihood with cross-eq correlation?

Hi Alok, The first example you give is a bit tricky since the linear predictor for Y1 includes Y2, I

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Can INlA doJoint likelihood with cross-eq correlation?

Hi Alok, The first example you give is a bit tricky since the linear predictor for Y1 includes Y2, I

3:19 AM

Rowenna Gryba, Helpdesk2

May 20

Setting an informed prior on quadratic term?

you can do xx = x1^2 upfront and then add xx to the data.frame and the formula otherwise, you can

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Setting an informed prior on quadratic term?

you can do xx = x1^2 upfront and then add xx to the data.frame and the formula otherwise, you can

May 20

Sylvan Benaksas, Finn Lindgren10

May 20

prediction numerical issues

For the data scaling, it might be that it's not scaled "enough"... Tweedie is a very

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prediction numerical issues

For the data scaling, it might be that it's not scaled "enough"... Tweedie is a very

May 20

Andrea Araujo, Sebastian Rodriguez3

May 19

Problem with the indexes?

Hello! I tried to reply but my message was deleted. Im not sure if a moderator deleted it due to

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Problem with the indexes?

Hello! I tried to reply but my message was deleted. Im not sure if a moderator deleted it due to

May 19

Bowen He, INLA help4

May 19

Crash INLA message

That is weird. Never seen this before. Can you share so I can rerun? Get Outlook for iOS From: r-inla

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Crash INLA message

That is weird. Never seen this before. Can you share so I can rerun? Get Outlook for iOS From: r-inla

May 19

May 19

consultation on INLA required, on a spatially structured model with mixed effects

Dear group, I am struggling to get anything out of a dataset which was tasked to analyse. I failed

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consultation on INLA required, on a spatially structured model with mixed effects

Dear group, I am struggling to get anything out of a dataset which was tasked to analyse. I failed

May 19

Lucinda Kirkpatrick

May 19

Error in fmesher.read(prefix, "s")

Hi, I keep getting the following error in INLA, when previously it was working fine. I have tried

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Error in fmesher.read(prefix, "s")

Hi, I keep getting the following error in INLA, when previously it was working fine. I have tried

May 19

Sebastian Rodriguez, Finn Lindgren5

May 18

Is it possible to interact a fixed effect with structured random effect

Hi Finn, Thanks for the clarification. I was wondering why I was getting some strange messaged with

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Is it possible to interact a fixed effect with structured random effect

Hi Finn, Thanks for the clarification. I was wondering why I was getting some strange messaged with

May 18

Richard Bailey, … Russell Dinnage11

May 18

Phylogenetic comparative analysis with INLA

Hi Richard, Thanks very much for getting back to me. This is very helpful feedback. I think the issue

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Phylogenetic comparative analysis with INLA

Hi Richard, Thanks very much for getting back to me. This is very helpful feedback. I think the issue

May 18

Richard Bailey, Finn Lindgren6

May 18

Fit a normal curve with inlabru?

For others following along, the continued discussion is at https://github.com/inlabru-org/inlabru/

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Fit a normal curve with inlabru?

For others following along, the continued discussion is at https://github.com/inlabru-org/inlabru/

May 18

valentina ndolo, Thierry Onkelinx4

May 18

Baseline (random effects only) areal model crash

Dear Val. You should also set prior for the Year random effect. I'd rather use only rw1 for Year

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Baseline (random effects only) areal model crash

Dear Val. You should also set prior for the Year random effect. I'd rather use only rw1 for Year

May 18

何博文, Finn Lindgren3

May 18

CRS Projections affect on the model estimation and interpolation?

Thanks Finn! Another question is that my verbose = TRUE generates the following messages and then

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CRS Projections affect on the model estimation and interpolation?

Thanks Finn! Another question is that my verbose = TRUE generates the following messages and then

May 18

何博文, … Finn Lindgren4

May 17

Inf in the posterior mean prediction and converge time

The resolution vs prior issue is for some models, but not all. For spde models, the mesh maps to a

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Inf in the posterior mean prediction and converge time

The resolution vs prior issue is for some models, but not all. For spde models, the mesh maps to a

May 17

Sam Passmore, … r.di...@gmail.com5

May 16

Converted Simple Phylogenetic model example from BRMS to INLA

Hi Sam, Try this: phylo_covar_mat <- ape::vcv(phylo) phylo_prec_mat <- solve(phylo_covar_mat)

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Converted Simple Phylogenetic model example from BRMS to INLA

Hi Sam, Try this: phylo_covar_mat <- ape::vcv(phylo) phylo_prec_mat <- solve(phylo_covar_mat)

May 16

May 16

Zero and One tricks for INLA?

The Zero and One tricks are used to sample from a model not included in the basic functions in BUGS:

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Zero and One tricks for INLA?

The Zero and One tricks are used to sample from a model not included in the basic functions in BUGS:

May 16

pstiles, Elias T. Krainski2

May 16

Zero-inflated Poisson BYM model

Hi, Before trying to understand what is wrong with the code (unfortunately we don't have to

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Zero-inflated Poisson BYM model

Hi, Before trying to understand what is wrong with the code (unfortunately we don't have to

May 16

Silvia Shawky, Elias T. Krainski2

May 16

Extend a spatial code to be appropriate

Hi, you can use the following code example (at the end it plots for one of the outcomes). But, notice

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Extend a spatial code to be appropriate

Hi, you can use the following code example (at the end it plots for one of the outcomes). But, notice

May 16

Olanrewaju Lawal, INLA help2

May 16

INLA Crashes around Index Table Entry

Can u upgrade to R 4.2, install the most recent testing version and set inla.setOption(inla.mode=“

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INLA Crashes around Index Table Entry

Can u upgrade to R 4.2, install the most recent testing version and set inla.setOption(inla.mode=“

May 16

May 15

Creating a spatio-temporal model using raster data as both dependent and independent data

Hi all, Has anyone ever used or is aware of someone using raster data/raster map as the dependent

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Creating a spatio-temporal model using raster data as both dependent and independent data

Hi all, Has anyone ever used or is aware of someone using raster data/raster map as the dependent

May 15

Alok Bohara, Helpdesk2

May 14

constraints in regression coefficients

A1B1 = A1 + B1 A2B2 = A2 + B2 A3B3 = A3 + B3 then form = Y ~ A1B1 + A2B2 + A3B3 if you need something

unread,

constraints in regression coefficients

A1B1 = A1 + B1 A2B2 = A2 + B2 A3B3 = A3 + B3 then form = Y ~ A1B1 + A2B2 + A3B3 if you need something

May 14

Hedvig Skirgård, … Finn Lindgren20

May 13

Binary data and Error in seq.default and Hyman splinefun

Thanks Finn! Med vänliga hälsningar, Hedvig Skirgård PhD, Australian National University Postdoc at

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Binary data and Error in seq.default and Hyman splinefun

Thanks Finn! Med vänliga hälsningar, Hedvig Skirgård PhD, Australian National University Postdoc at

May 13

May 12

Gamma Model: Identity Link?

Hello, Is there any way for R-inla to provide an identity link for Gamma GLMMs? I understand the

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Gamma Model: Identity Link?

Hello, Is there any way for R-inla to provide an identity link for Gamma GLMMs? I understand the

May 12

Radoslaw Panczak, Helpdesk5

May 12

INLA install problem on HPC

it seems that this is happeningin the R code, hence nothing to do in the inla-binary -----Original

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INLA install problem on HPC

it seems that this is happeningin the R code, hence nothing to do in the inla-binary -----Original

May 12

May 11

tobit/censored model with INLA

Hi: 1.Is there an example of a tobit model code somewhere using INLA? 2. Also, I am having trouble

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tobit/censored model with INLA

Hi: 1.Is there an example of a tobit model code somewhere using INLA? 2. Also, I am having trouble

May 11

Julianne Meisner, Finn Lindgren10

May 11

Examples of LGCP for disease surveillance in R-INLA

inlabru implements the line transect version, see example in https://inlabru-org.github.io/inlabru/

unread,

Examples of LGCP for disease surveillance in R-INLA

inlabru implements the line transect version, see example in https://inlabru-org.github.io/inlabru/

May 11

Pierre Roudier2

May 10

Poor prediction interval coverage probability (PCIP) using INLA

Below a comparison with a similar approach, using {mgcv}. It is giving a PICP value of 0.98, much

unread,

Poor prediction interval coverage probability (PCIP) using INLA

Below a comparison with a similar approach, using {mgcv}. It is giving a PICP value of 0.98, much

May 10

Insang Song, … Elias T. Krainski8

May 10

Meaning of the verbose output and NA in modes of model results

Dear Dr. Krainski: Thank you very much for the information! I was totally unaware of the saved

unread,

Meaning of the verbose output and NA in modes of model results

Dear Dr. Krainski: Thank you very much for the information! I was totally unaware of the saved

May 10

whee...@gmail.com

May 10

estimating risk difference with bym2 spatiotemporal model

Hi, Apologies if this is already answered, I couldn't find it. I'm looking for advice on

unread,

estimating risk difference with bym2 spatiotemporal model

Hi, Apologies if this is already answered, I couldn't find it. I'm looking for advice on

May 10

May 10

won't calculate predicted.p.value for LipCancerData example

I did not see this in the book (Spatial and Spatio-temp ..) but I added the following line control.

unread,

won't calculate predicted.p.value for LipCancerData example

I did not see this in the book (Spatial and Spatio-temp ..) but I added the following line control.

May 10

May 9

Re: [r-inla] Trouble installing INLA

this 'trick' works for Mac and Win, but for linux one might have to download manually version

unread,

Re: [r-inla] Trouble installing INLA

this 'trick' works for Mac and Win, but for linux one might have to download manually version

May 9

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