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R-inla discussion group

1–30 of 3769

Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to help@r-inla.org. You are of'course free to comment on questions from others as well.

Best,
H

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Scott Foster, … Helpdesk (Haavard Rue)8

1:42 AM

multiple likelihoods with (partial) common parameters

On Fri, 2025-06-13 at 10:38 +1000, Scott Foster wrote: > Thanks! > > This is indeed what I

unread,

multiple likelihoods with (partial) common parameters

On Fri, 2025-06-13 at 10:38 +1000, Scott Foster wrote: > Thanks! > > This is indeed what I

1:42 AM

Florine Kempf, Helpdesk (Haavard Rue)7

Jun 12

Issue Running inla() with mclapply on Cluster (Newton-Raphson Optimizer Did Not Converge)

If you're doing this trick, you'll be better off running each job in serial, just add inla(..

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Issue Running inla() with mclapply on Cluster (Newton-Raphson Optimizer Did Not Converge)

If you're doing this trick, you'll be better off running each job in serial, just add inla(..

Jun 12

mike.bl...@gmail.com, … Marko Kvakić11

Jun 12

SPDE overfitting?

Dear Abi, I hope this find you well, as well as other facing the same issue. My solution was the

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SPDE overfitting?

Dear Abi, I hope this find you well, as well as other facing the same issue. My solution was the

Jun 12

Nafsika Antoniadou

Jun 10

Priors in inla.mesh.2d

Hello, I am using inla.mesh.2d Loc <- cbind(df$Xkm, df$Ykm) D <- dist(Loc) ConvHull <- inla.

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Priors in inla.mesh.2d

Hello, I am using inla.mesh.2d Loc <- cbind(df$Xkm, df$Ykm) D <- dist(Loc) ConvHull <- inla.

Jun 10

Nafsika Antoniadou, Helpdesk (Haavard Rue)3

Jun 10

prior-posterior conflict diagnostics

Thank you! Are there any recommendations on what tests to use? Στις Τρίτη 10 Ιουνίου 2025 στις 1:13:

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prior-posterior conflict diagnostics

Thank you! Are there any recommendations on what tests to use? Στις Τρίτη 10 Ιουνίου 2025 στις 1:13:

Jun 10

Sylvan Benaksas, … Elias T. Krainski6

Jun 10

Fix Matern hypers in barrier model

I've fixed this in the current github. On Tue, 10 Jun 2025 at 14:15, Sylvan Benaksas <

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Fix Matern hypers in barrier model

I've fixed this in the current github. On Tue, 10 Jun 2025 at 14:15, Sylvan Benaksas <

Jun 10

Thomas Tong, … John Molitor8

Jun 8

Prediction by INLA

Elias, Thanks for this - very helpful. Does this prediction approach properly deal with changes in x

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Prediction by INLA

Elias, Thanks for this - very helpful. Does this prediction approach properly deal with changes in x

Jun 8

Angela Fanelli, Helpdesk (Haavard Rue)3

Jun 7

Clarification on INLA's "bym2" Functionality with Multiple Records per Spatial Unit

I see nuts3_nb has an attribute called 'region.id', which is in somewhat random order. I

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Clarification on INLA's "bym2" Functionality with Multiple Records per Spatial Unit

I see nuts3_nb has an attribute called 'region.id', which is in somewhat random order. I

Jun 7

Aria, Helpdesk (Haavard Rue)2

Jun 7

Question About Shared Random Effects and the copy Feature

check this example and also 'data' showing how to use NA to remove ignore terms On Thu, 2025-

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Question About Shared Random Effects and the copy Feature

check this example and also 'data' showing how to use NA to remove ignore terms On Thu, 2025-

Jun 7

Pulong Ma, Finn Lindgren3

Jun 6

Mismatch for precision matrix construction

Thank you very much for correcting my silly mistake. Best, Pulong On Friday, June 6, 2025 at 1:09:47

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Mismatch for precision matrix construction

Thank you very much for correcting my silly mistake. Best, Pulong On Friday, June 6, 2025 at 1:09:47

Jun 6

Jun 6

Clarification on INLA's "bym2" Functionality with Multiple Records per Spatial Unit

Hello, I am reaching out to seek clarification on how the "bym2" function in INLA handles

unread,

Clarification on INLA's "bym2" Functionality with Multiple Records per Spatial Unit

Hello, I am reaching out to seek clarification on how the "bym2" function in INLA handles

Jun 6

S B Lee, Finn Lindgren8

Jun 5

Obtain Precision/Covariance Matrix for Observed Locations

Hi Finn, My apologies for the late response here. Thank you very much for the detailed and thoughtful

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Obtain Precision/Covariance Matrix for Observed Locations

Hi Finn, My apologies for the late response here. Thank you very much for the detailed and thoughtful

Jun 5

Camille Morlighem, Helpdesk (Haavard Rue)3

Jun 4

parameters of ZIB type 2

It worked great, many thanks ! Le vendredi 30 mai 2025 à 14:58:04 UTC+2, Helpdesk (Haavard Rue) a

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parameters of ZIB type 2

It worked great, many thanks ! Le vendredi 30 mai 2025 à 14:58:04 UTC+2, Helpdesk (Haavard Rue) a

Jun 4

Ruby Ji, … Finn Lindgren7

Jun 3

Anisotropy possibility in R-INLA SPDE

We've been focusing on the theory for how to construct sensible priors, and haven't had time

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Anisotropy possibility in R-INLA SPDE

We've been focusing on the theory for how to construct sensible priors, and haven't had time

Jun 3

Subramanian Swaminathan, Håvard Rue4

Jun 2

Failed to install INLA version in macOS with R ver 4.5

Thank Prof Rue, installed and works fine. Very kind of you. S. Subramanian On Saturday, May 31, 2025

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Failed to install INLA version in macOS with R ver 4.5

Thank Prof Rue, installed and works fine. Very kind of you. S. Subramanian On Saturday, May 31, 2025

Jun 2

Sylvan Benaksas, Helpdesk (Haavard Rue)2

May 30

weights argument

the weights argument will scale the log-likelihood, and this might or might be what you want. with

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weights argument

the weights argument will scale the log-likelihood, and this might or might be what you want. with

May 30

high...@highstat.com, Finn Lindgren2

May 29

Joint likelihood with different meshes

Hi, by the easiest option is likely to use a single mesh with disconnected components. The only snag

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Joint likelihood with different meshes

Hi, by the easiest option is likely to use a single mesh with disconnected components. The only snag

May 29

Hossein Baghishani, … Janet Van Niekerk5

May 29

Inquiry on Joint Modeling Using INLA

Thank you so much. I sent you the details. All the best, Hossein On Tuesday, May 27, 2025, Janet Van

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Inquiry on Joint Modeling Using INLA

Thank you so much. I sent you the details. All the best, Hossein On Tuesday, May 27, 2025, Janet Van

May 29

Auman Chan, … Håvard Rue4

May 26

The plots of residuals contain a gap

I would then guess its something in the log-transform that does this, and its a feature not bug On

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The plots of residuals contain a gap

I would then guess its something in the log-transform that does this, and its a feature not bug On

May 26

Aminath Shausan, FU peter2

May 25

extraconst for AR1 prior in Knorr-Held (2000) Type II

It seems that AR1, like IID, does not need constr=TRUE, so "control.group" can be used to

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extraconst for AR1 prior in Knorr-Held (2000) Type II

It seems that AR1, like IID, does not need constr=TRUE, so "control.group" can be used to

May 25

John Molitor, … Helpdesk (Haavard Rue)6

May 25

Monotonically increasing RW2

there is no guarentee that you'll get something increasing though... you can define something

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Monotonically increasing RW2

there is no guarentee that you'll get something increasing though... you can define something

May 25

Aminath Shausan, Helpdesk (Haavard Rue)2

May 25

fitting Bernardinelli model with covariates

On Mon, 2025-05-19 at 21:39 -0700, Aminath Shausan wrote: > Dear community, > > I am trying

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fitting Bernardinelli model with covariates

On Mon, 2025-05-19 at 21:39 -0700, Aminath Shausan wrote: > Dear community, > > I am trying

May 25

Nafsika Antoniadou, Håvard Rue2

May 20

Interpolation with the the dMatern model

the easy way is to include the points you want to prediuct in the model with NA response On Mon, 2025

unread,

Interpolation with the the dMatern model

the easy way is to include the points you want to prediuct in the model with NA response On Mon, 2025

May 20

Rafael Lopes, Helpdesk (Haavard Rue)3

May 16

Numerical singular in AQA^t

I changed to 0.1 and still get the warning about numerically singular Em sex., 16 de mai. de 2025 às

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Numerical singular in AQA^t

I changed to 0.1 and still get the warning about numerically singular Em sex., 16 de mai. de 2025 às

May 16

Nafsika Antoniadou, Helpdesk (Haavard Rue)2

May 16

I need to be able to rerun it here, to check details. Please make sure to use R-4.5 and the most

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I need to be able to rerun it here, to check details. Please make sure to use R-4.5 and the most

May 16

Virginia Morera Pujol, … Denis Rustand5

May 15

The inla result collection failed

Hi, This could deserve a separate thread as it's likely a different issue. The code runs fine for

unread,

The inla result collection failed

Hi, This could deserve a separate thread as it's likely a different issue. The code runs fine for

May 15

May 14

INLA Failure: Issues with a single covaraite?

Hi all, I am running a zinb-glmm and a zinb-spde-glmm in inla for a project on ticks. I have

unread,

INLA Failure: Issues with a single covaraite?

Hi all, I am running a zinb-glmm and a zinb-spde-glmm in inla for a project on ticks. I have

May 14

Guido Fioravanti, Håvard Rue2

May 12

Question about Interpretation of Validation Metrics from inla.group.cv

In general, there is no answer what is the 'best' one, as this is defined by what you chose

unread,

Question about Interpretation of Validation Metrics from inla.group.cv

In general, there is no answer what is the 'best' one, as this is defined by what you chose

May 12

Charlotte Taelman, … Håvard Rue4

May 12

Log-transformation needed for predictions by negative-binomial model?

Hi only the linear predictor in the negative binomial part, is there in 'fitted.values'. this

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Log-transformation needed for predictions by negative-binomial model?

Hi only the linear predictor in the negative binomial part, is there in 'fitted.values'. this

May 12

Samuel Reiterbund-Olley, … Virgilio Gómez-Rubio9

May 12

Hierarchal SLM model in INLA?

Hi Virgilio, I tried the SLM function with the new coding for region, but still threw off a similar

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Hierarchal SLM model in INLA?

Hi Virgilio, I tried the SLM function with the new coding for region, but still threw off a similar

May 12

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