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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to
help@r-inla.org
. You are of'course free to comment on questions from others as well.
Best,
H
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Scott Foster
, …
Helpdesk (Haavard Rue)
8
1:42 AM
multiple likelihoods with (partial) common parameters
On Fri, 2025-06-13 at 10:38 +1000, Scott Foster wrote: > Thanks! > > This is indeed what I
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multiple likelihoods with (partial) common parameters
On Fri, 2025-06-13 at 10:38 +1000, Scott Foster wrote: > Thanks! > > This is indeed what I
1:42 AM
Florine Kempf
,
Helpdesk (Haavard Rue)
7
Jun 12
Issue Running inla() with mclapply on Cluster (Newton-Raphson Optimizer Did Not Converge)
If you're doing this trick, you'll be better off running each job in serial, just add inla(..
unread,
Issue Running inla() with mclapply on Cluster (Newton-Raphson Optimizer Did Not Converge)
If you're doing this trick, you'll be better off running each job in serial, just add inla(..
Jun 12
mike.bl...@gmail.com
, …
Marko Kvakić
11
Jun 12
SPDE overfitting?
Dear Abi, I hope this find you well, as well as other facing the same issue. My solution was the
unread,
SPDE overfitting?
Dear Abi, I hope this find you well, as well as other facing the same issue. My solution was the
Jun 12
Nafsika Antoniadou
Jun 10
Priors in inla.mesh.2d
Hello, I am using inla.mesh.2d Loc <- cbind(df$Xkm, df$Ykm) D <- dist(Loc) ConvHull <- inla.
unread,
Priors in inla.mesh.2d
Hello, I am using inla.mesh.2d Loc <- cbind(df$Xkm, df$Ykm) D <- dist(Loc) ConvHull <- inla.
Jun 10
Nafsika Antoniadou
,
Helpdesk (Haavard Rue)
3
Jun 10
prior-posterior conflict diagnostics
Thank you! Are there any recommendations on what tests to use? Στις Τρίτη 10 Ιουνίου 2025 στις 1:13:
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prior-posterior conflict diagnostics
Thank you! Are there any recommendations on what tests to use? Στις Τρίτη 10 Ιουνίου 2025 στις 1:13:
Jun 10
Sylvan Benaksas
, …
Elias T. Krainski
6
Jun 10
Fix Matern hypers in barrier model
I've fixed this in the current github. On Tue, 10 Jun 2025 at 14:15, Sylvan Benaksas <
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Fix Matern hypers in barrier model
I've fixed this in the current github. On Tue, 10 Jun 2025 at 14:15, Sylvan Benaksas <
Jun 10
Thomas Tong
, …
John Molitor
8
Jun 8
Prediction by INLA
Elias, Thanks for this - very helpful. Does this prediction approach properly deal with changes in x
unread,
Prediction by INLA
Elias, Thanks for this - very helpful. Does this prediction approach properly deal with changes in x
Jun 8
Angela Fanelli
,
Helpdesk (Haavard Rue)
3
Jun 7
Clarification on INLA's "bym2" Functionality with Multiple Records per Spatial Unit
I see nuts3_nb has an attribute called 'region.id', which is in somewhat random order. I
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Clarification on INLA's "bym2" Functionality with Multiple Records per Spatial Unit
I see nuts3_nb has an attribute called 'region.id', which is in somewhat random order. I
Jun 7
Aria
,
Helpdesk (Haavard Rue)
2
Jun 7
Question About Shared Random Effects and the copy Feature
check this example and also 'data' showing how to use NA to remove ignore terms On Thu, 2025-
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Question About Shared Random Effects and the copy Feature
check this example and also 'data' showing how to use NA to remove ignore terms On Thu, 2025-
Jun 7
Pulong Ma
,
Finn Lindgren
3
Jun 6
Mismatch for precision matrix construction
Thank you very much for correcting my silly mistake. Best, Pulong On Friday, June 6, 2025 at 1:09:47
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Mismatch for precision matrix construction
Thank you very much for correcting my silly mistake. Best, Pulong On Friday, June 6, 2025 at 1:09:47
Jun 6
Angela Fanelli
Jun 6
Clarification on INLA's "bym2" Functionality with Multiple Records per Spatial Unit
Hello, I am reaching out to seek clarification on how the "bym2" function in INLA handles
unread,
Clarification on INLA's "bym2" Functionality with Multiple Records per Spatial Unit
Hello, I am reaching out to seek clarification on how the "bym2" function in INLA handles
Jun 6
S B Lee
,
Finn Lindgren
8
Jun 5
Obtain Precision/Covariance Matrix for Observed Locations
Hi Finn, My apologies for the late response here. Thank you very much for the detailed and thoughtful
unread,
Obtain Precision/Covariance Matrix for Observed Locations
Hi Finn, My apologies for the late response here. Thank you very much for the detailed and thoughtful
Jun 5
Camille Morlighem
,
Helpdesk (Haavard Rue)
3
Jun 4
parameters of ZIB type 2
It worked great, many thanks ! Le vendredi 30 mai 2025 à 14:58:04 UTC+2, Helpdesk (Haavard Rue) a
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parameters of ZIB type 2
It worked great, many thanks ! Le vendredi 30 mai 2025 à 14:58:04 UTC+2, Helpdesk (Haavard Rue) a
Jun 4
Ruby Ji
, …
Finn Lindgren
7
Jun 3
Anisotropy possibility in R-INLA SPDE
We've been focusing on the theory for how to construct sensible priors, and haven't had time
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Anisotropy possibility in R-INLA SPDE
We've been focusing on the theory for how to construct sensible priors, and haven't had time
Jun 3
Subramanian Swaminathan
,
Håvard Rue
4
Jun 2
Failed to install INLA version in macOS with R ver 4.5
Thank Prof Rue, installed and works fine. Very kind of you. S. Subramanian On Saturday, May 31, 2025
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Failed to install INLA version in macOS with R ver 4.5
Thank Prof Rue, installed and works fine. Very kind of you. S. Subramanian On Saturday, May 31, 2025
Jun 2
Sylvan Benaksas
,
Helpdesk (Haavard Rue)
2
May 30
weights argument
the weights argument will scale the log-likelihood, and this might or might be what you want. with
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weights argument
the weights argument will scale the log-likelihood, and this might or might be what you want. with
May 30
high...@highstat.com
,
Finn Lindgren
2
May 29
Joint likelihood with different meshes
Hi, by the easiest option is likely to use a single mesh with disconnected components. The only snag
unread,
Joint likelihood with different meshes
Hi, by the easiest option is likely to use a single mesh with disconnected components. The only snag
May 29
Hossein Baghishani
, …
Janet Van Niekerk
5
May 29
Inquiry on Joint Modeling Using INLA
Thank you so much. I sent you the details. All the best, Hossein On Tuesday, May 27, 2025, Janet Van
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Inquiry on Joint Modeling Using INLA
Thank you so much. I sent you the details. All the best, Hossein On Tuesday, May 27, 2025, Janet Van
May 29
Auman Chan
, …
Håvard Rue
4
May 26
The plots of residuals contain a gap
I would then guess its something in the log-transform that does this, and its a feature not bug On
unread,
The plots of residuals contain a gap
I would then guess its something in the log-transform that does this, and its a feature not bug On
May 26
Aminath Shausan
,
FU peter
2
May 25
extraconst for AR1 prior in Knorr-Held (2000) Type II
It seems that AR1, like IID, does not need constr=TRUE, so "control.group" can be used to
unread,
extraconst for AR1 prior in Knorr-Held (2000) Type II
It seems that AR1, like IID, does not need constr=TRUE, so "control.group" can be used to
May 25
John Molitor
, …
Helpdesk (Haavard Rue)
6
May 25
Monotonically increasing RW2
there is no guarentee that you'll get something increasing though... you can define something
unread,
Monotonically increasing RW2
there is no guarentee that you'll get something increasing though... you can define something
May 25
Aminath Shausan
,
Helpdesk (Haavard Rue)
2
May 25
fitting Bernardinelli model with covariates
On Mon, 2025-05-19 at 21:39 -0700, Aminath Shausan wrote: > Dear community, > > I am trying
unread,
fitting Bernardinelli model with covariates
On Mon, 2025-05-19 at 21:39 -0700, Aminath Shausan wrote: > Dear community, > > I am trying
May 25
Nafsika Antoniadou
,
Håvard Rue
2
May 20
Interpolation with the the dMatern model
the easy way is to include the points you want to prediuct in the model with NA response On Mon, 2025
unread,
Interpolation with the the dMatern model
the easy way is to include the points you want to prediuct in the model with NA response On Mon, 2025
May 20
Rafael Lopes
,
Helpdesk (Haavard Rue)
3
May 16
Numerical singular in AQA^t
I changed to 0.1 and still get the warning about numerically singular Em sex., 16 de mai. de 2025 às
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Numerical singular in AQA^t
I changed to 0.1 and still get the warning about numerically singular Em sex., 16 de mai. de 2025 às
May 16
Nafsika Antoniadou
,
Helpdesk (Haavard Rue)
2
May 16
DIC is NA
I need to be able to rerun it here, to check details. Please make sure to use R-4.5 and the most
unread,
DIC is NA
I need to be able to rerun it here, to check details. Please make sure to use R-4.5 and the most
May 16
Virginia Morera Pujol
, …
Denis Rustand
5
May 15
The inla result collection failed
Hi, This could deserve a separate thread as it's likely a different issue. The code runs fine for
unread,
The inla result collection failed
Hi, This could deserve a separate thread as it's likely a different issue. The code runs fine for
May 15
Grace Hummell
May 14
INLA Failure: Issues with a single covaraite?
Hi all, I am running a zinb-glmm and a zinb-spde-glmm in inla for a project on ticks. I have
unread,
INLA Failure: Issues with a single covaraite?
Hi all, I am running a zinb-glmm and a zinb-spde-glmm in inla for a project on ticks. I have
May 14
Guido Fioravanti
,
Håvard Rue
2
May 12
Question about Interpretation of Validation Metrics from inla.group.cv
In general, there is no answer what is the 'best' one, as this is defined by what you chose
unread,
Question about Interpretation of Validation Metrics from inla.group.cv
In general, there is no answer what is the 'best' one, as this is defined by what you chose
May 12
Charlotte Taelman
, …
Håvard Rue
4
May 12
Log-transformation needed for predictions by negative-binomial model?
Hi only the linear predictor in the negative binomial part, is there in 'fitted.values'. this
unread,
Log-transformation needed for predictions by negative-binomial model?
Hi only the linear predictor in the negative binomial part, is there in 'fitted.values'. this
May 12
Samuel Reiterbund-Olley
, …
Virgilio Gómez-Rubio
9
May 12
Hierarchal SLM model in INLA?
Hi Virgilio, I tried the SLM function with the new coding for region, but still threw off a similar
unread,
Hierarchal SLM model in INLA?
Hi Virgilio, I tried the SLM function with the new coding for region, but still threw off a similar
May 12