[R] *** caught segfault *** address 0x18, cause 'memory not mapped'
bernardo lagos alvarez
I've been run the following codes. However, I've been getting an
unusual segfault
that I'm unable to trace its origin. Please give me a light to
decipher the "caught segfault"
Thanks for you attention.
Bernardo.
> options(STERM='iESS', editor='emacsclient')
> rm(list = ls())
> > source("fgenIGLD.R") #RNG of IGLD(mu,b,sigma)
> > source("fsYUTH.R") #the fucntions Y,U,Tbbarran and H necessary to calcualte the hat{b}
> > source("fMLEPFP.R") #the maximun likelihood profile estimation of IGLD(mu,sigma)
> > source("f04P.R") #it to compute the mle, jacknife and bootstrap
> > source("fprofileloglik06.R") #the log-likelihood profile of IGLD(mu,sigma)
> > source("fmgfIGLD.R") #read the fmgfIGLD.R file defining the fmgfIGLD function. It is useful for the prox.
> > source("f02.R") #here the function kappas.and.deriv(n,
> > source("fsimbiasIGLDP.R") #it to compute de bias of jacknife and bootstrap
> > source("f01P.R") #in this is "fmainsimbiasP"
> > ptm<-proc.time()
> sink("out22031001.txt")
> > fmainsimbiasP(10000,100)
proc.time()-ptm
*** caught segfault ***
address 0x18, cause 'memory not mapped'
Traceback:
1: nlm(f = fprof_deriv, x = x, p = parHInt, b = parFIX, hessian = T,
iterlim = 2000, check.analyticals = F, stepmax = 10)
2: doTryCatch(return(expr), name, parentenv, handler)
3: tryCatchOne(expr, names, parentenv, handlers[[1]])
4: tryCatchList(expr, classes, parentenv, handlers)
5: tryCatch(expr, error = function(e) { call <- conditionCall(e)
if (!is.null(call)) { if (identical(call[[1]],
quote(doTryCatch))) call <- sys.call(-4) dcall <-
deparse(call)[1] prefix <- paste("Error in", dcall, ": ")
LONG <- 75 msg <- conditionMessage(e) sm <-
strsplit(msg, "\n")[[1]] if (14 + nchar(dcall, type = "w") +
nchar(sm[1], type = "w") > LONG) prefix <-
paste(prefix, "\n ", sep = "") } else prefix <- "Error : "
msg <- paste(prefix, conditionMessage(e), "\n", sep = "")
.Internal(seterrmessage(msg[1])) if (!silent &&
identical(getOption("show.error.messages"), TRUE)) {
cat(msg, file = stderr()) .Internal(printDeferredWarnings())
} invisible(structure(msg, class = "try-error"))})
6: try(nlm(f = fprof_deriv, x = x, p = parHInt, b = parFIX, hessian =
T, iterlim = 2000, check.analyticals = F, stepmax = 10), silent =
T)
7: fMLEPFP(datanpboot, FALSE)
8: fboot.jack.mleP(data, B)
9: fsimbiasIGLDP(N[i], parH[, j], R, B)
10: fmainsimbiasP(10000, 100)
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection: Selection: Selection: 2
Save workspace image? [y/n/c]: n
Process R:2 finished at Thu Mar 25 08:06:26 2010
>sessionInfo()
R version 2.7.2 beta (2008-08-16 r46368)
i486-pc-linux-gnu
locale:
LC_CTYPE=es_CL.UTF-8;LC_NUMERIC=C;LC_TIME=es_CL.UTF-8;LC_COLLATE=es_CL.UTF-8;LC_MONETARY=C;LC_MESSAGES=es_CL.UTF-8;LC_PAPER=es_CL.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=es_CL.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
> version
_
platform i486-pc-linux-gnu
arch i486
os linux-gnu
system i486, linux-gnu
status beta
major 2
minor 7.2
year 2008
month 08
day 16
svn rev 46368
language R
version.string R version 2.7.2 beta (2008-08-16 r46368)
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Henrik Bengtsson
your more likely to get any response to this if you first check if the
issue has been solved in a more recent version of R. Your version is
>1.5 years old.
/Henrik