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Hi, I am new to QuPath and I was wondering if there was a way to quantify bald areas in H&E stained sections. I have attached images for your reference. I have many images to process and manual quantification is very tedious. Could someone help me with this?
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Try selecting the area, SLIC superpixel segmentation, then Add intensity measurements (hematoxylin channel is probably the most useful). I also made use of the Haralick texture features at the bottom of the Add Intensity Measurements dialog to determine regions where either eosin or hematoxylin staining was very constant.