Zea_mays_v5.gtf Warning! Line with wrong attributes is skipped:

29 views
Skip to first unread message

Dragana Dudic

unread,
Jan 27, 2022, 9:49:23 AM1/27/22
to QualiMap
Hi,

I have downloaded latest version of Zea mays gff3 from EnsemblPlants, converted it to gtf with gffread and tryed to use with Qualimap 2.2.2b, but it was unable to load any region from that file. I found solved similar issue where problem was semicolon. Maybe there is a similar problem in this case, maybe colon? 
This is the last portion of output:
Warning! Line with wrong attributes is skipped:
9       ensembl CDS     162896791       162896853       .       +       0       Parent=transcript:Zm00001eb404730_T004
Warning! Line with wrong attributes is skipped:
9       ensembl CDS     162897030       162897125       .       +       0       Parent=transcript:Zm00001eb404730_T004

Can you please help me to resolve this?

Best regards,
Dragana
Reply all
Reply to author
Forward
0 new messages