Hi,
I have downloaded latest version of Zea mays gff3 from EnsemblPlants, converted it to gtf with gffread and tryed to use with Qualimap 2.2.2b, but it was unable to load any region from that file. I found solved similar issue where problem was semicolon. Maybe there is a similar problem in this case, maybe colon?
This is the last portion of output:
Warning! Line with wrong attributes is skipped:
9 ensembl CDS 162896791 162896853 . + 0 Parent=transcript:Zm00001eb404730_T004
Warning! Line with wrong attributes is skipped:
9 ensembl CDS 162897030 162897125 . + 0 Parent=transcript:Zm00001eb404730_T004
Can you please help me to resolve this?
Best regards,
Dragana