Okay, that helps me understand what the Status LEDs are for. What I failed to mention was that the Touchpad wasn't working when I tested out the configuration file. I don't see anything wrong with the configuration file, so I'm not quite sure what to do.
Now that I think about it, it seems that a while back I was messing with one of the rows towards the bottom of the file, and somehow the single row got blanked out, (it was all white) and it wouldn't let me select the Output, Function, or Input, so I ended up deleting that row. I don't know if that is what caused the problem.