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Hi,
The information provided here is very limited to fully diagnose the issue.
Please keep in mind that streamflow and the water leaving an HRU are distinct components—while they are certainly related, they do not necessarily correlate directly due to routing, lag, and other basin-wide processes.To understand what is happening, you need to analyze the total water balance of your setup. Check your precipitation, evapotranspiration (ET), change in soil storage, and groundwater components to see how the water is moving through the system.
Read and perform the swat+ model verification: https://www.sciencedirect.com/science/article/pii/S1364815223002645 , https://biopsichas.github.io/SWATdoctR/ before proceeding to hard calibration.
Best regards,
Natalja