id_to_taxonomy_filepath:/path/developer/sh_taxonomy_qiime_ver7_97_01.12.2017_dev.txt
reference_sequences_fp:/path/developer/sh_refs_qiime_ver7_97_01.12.2017_dev.fasta
Result path: /tmp/assign-taxPD_n9w
.uc file contents:
# uclust --input /path/data.fa --id 0.9 --rev --maxaccepts 3 --allhits --libonly --lib /path/developer/sh_refs_qiime_ver7_97_01.12.2017_dev.fasta --uc /tmp/UclustConsensusTaxonAssigner_DSfjiT.uc
# version=1.2.22
# Tab-separated fields:
# 1=Type, 2=ClusterNr, 3=SeqLength or ClusterSize, 4=PctId, 5=Strand, 6=QueryStart, 7=SeedStart, 8=Alignment, 9=QueryLabel, 10=TargetLabel
# Record types (field 1): L=LibSeed, S=NewSeed, H=Hit, R=Reject, D=LibCluster, C=NewCluster, N=NoHit
# For C and D types, PctId is average id with seed.
# QueryStart and SeedStart are zero-based relative to start of sequence.
# If minus strand, SeedStart is relative to reverse-complemented seed.
L 7293 716 * * * * * SH494153.07FU_HG935852_reps *
H 7293 257 93.4 + 0 0 10I211MI30MD15M449I OTU8.17739595034258e+28 SH494153.07FU_HG935852_reps
L 9750 658 * * * * * SH0354.07FU_AY046553_refs *
H 9750 257 92.2 + 0 0 37MI77MI74MD68M400I OTU8.17739595034258e+28 SH0354.07FU_AY046553_refs
L 19700 720 * * * * * SH006345.07FU_KF057516_reps *
H 19700 257 91.4 + 0 0 16I26MI11M3I46MI35M4I70MD54MI14M438I OTU8.17739595034258e+28 SH006345.07FU_KF057516_reps
L 5173 1137 * * * * * SH017876.07FU_JN890081_reps *
H 5173 182 97.3 + 0 0 6I87MI74MI21M947I OTU9.15302265991585e+28 SH017876.07FU_JN890081_reps
H 5173 181 97.2 + 0 0 6I11MI74MI76MI20M947I OTU9.90187917408672e+28 SH017876.07FU_JN890081_reps
H 5173 181 96.7 + 0 0 6I11MI74MI76MI20M947I OTU2.34003445922049e+28 SH017876.07FU_JN890081_reps
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(There are still many lines behind with similar formats)