qiimme error jackknifed_beta_diversity.py

[Leandro de Mattos]

Dear all,

I'm trying to run jackknifed_beta_diversity.py, with:

/usr/lib/qiime/bin/jackknifed_beta_diversity.py -i step_5_out_tax97gg.biom -o bdiv_jk100 -e 10 -m mapp_corrected.txt -t step_4.tre

but it is showing how output error:

Traceback (most recent call last):

  File "/usr/lib/qiime/bin/jackknifed_beta_diversity.py", line 183, in <module>

    main()

  File "/usr/lib/qiime/bin/jackknifed_beta_diversity.py", line 146, in main

    option_parser)

  File "/usr/lib/python2.7/dist-packages/qiime/workflow/util.py", line 160, in validate_and_set_jobs_to_start

    if (jobs_to_start != int(default_jobs_to_start)) and \

TypeError: int() argument must be a string or a number, not 'NoneType'

Any sugesttions?????

OBS: I can run unifrac beta diversity, but I can not jackknifed_beta_diversity.py.

Thanks for any help.

Leandro

[Justine Debelius]

Hi Leandro,

Could you please post your output of print_qiime_config.py?

Thanks!
Justine