I have another doubts how to proceed with my analysis to test significance between the treatments I have and depending on time of the incubation.
I have split the otu tables according to treatments and time and tested individually by group_significance.py. but I am wondering if there is any script that allows me to test the 2 factors together.
let's say I would like to compute the significance on the abundance depending on the treatment but I have independent sampling along time scale.
so I would like also to know if the incubation time is affecting the variation.
there is a way how to test time series samples in Qiime?
in the table a little portion of my samples for you to see.
let's say that 37-42 are triplicates of 1 treatment relative to 2 time points, 43-48 the control relative to 2 time points as well.
the complete set has 4 treatments and 3 time points.
I have the 1.8 version of qiime.
Thanks you folks for help.
all the best,
EXTRACT OF TABLE from summarize_taxa (trimming the rare otu)