How to import fastq file Qiime 2?

252 views
Skip to first unread message

balamurugan S

unread,
Nov 27, 2017, 2:21:43 AM11/27/17
to Qiime 1 Forum
Hi i am new to qiime2 i just install qiime2 in ubuntu and its working. I have tried tutorials and it was also fine.
But my question is  i am having one fastq file (paired end) from the sequencer can one one help in analysis it. i want to classify my seq so that i can upload  in picrust. 

Jai Ram Rideout

unread,
Nov 27, 2017, 10:42:47 AM11/27/17
to Qiime 1 Forum
Hello,

Can you please post your question on the QIIME 2 Forum? This forum is reserved for QIIME 1 user support. Thanks!

Jai

balamurugan S

unread,
Nov 27, 2017, 11:47:39 AM11/27/17
to Qiime 1 Forum
Hi jai ram
Ok. Would you help me to analyze the my sample in qiime 1. I am having one paired end fastq file how to import into qiime 1 and get OTUs and taxanomy analysis with greengene so that i can upload in Picrust.
Thank you

Jai Ram Rideout

unread,
Nov 28, 2017, 11:42:40 AM11/28/17
to qiime...@googlegroups.com
Hello,

Since it sounds like you're just getting started with QIIME, I highly recommend learning QIIME 2 instead of QIIME 1 at this point. We are dropping official support for QIIME 1 on January 1, 2018 (1 month away!). Check out the QIIME 2 website to get started!

Best,
Jai
Reply all
Reply to author
Forward
0 new messages