Problem with install of qiime 1.8.0

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Dendroctonus

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Jan 11, 2017, 1:58:06 PM1/11/17
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Hi everyone
i have been working with qiime 1.8.0, however recently,  i have need install qiime 1.8.0 in other macbook pro, however i can´n yet.
Someone could help me, I do not know what happens, I install it, I uninstall it and reinstall it, but it does not run
the messege is :

MacQIIME MacBook-Pro-de-Alfredo:~ $ print_qiime_config.py
from: can't read /var/mail/__future__
/macqiime/QIIME/bin/print_qiime_config.py: line 5: __author__: command not found
/macqiime/QIIME/bin/print_qiime_config.py: line 6: __copyright__: command not found
/macqiime/QIIME/bin/print_qiime_config.py: line 7: __credits__: command not found
/macqiime/QIIME/bin/print_qiime_config.py: line 8: Justin Kuczynski,: command not found
/macqiime/QIIME/bin/print_qiime_config.py: line 9: Emily TerAvest]: command not found
/macqiime/QIIME/bin/print_qiime_config.py: line 10: __license__: command not found
/macqiime/QIIME/bin/print_qiime_config.py: line 11: __version__: command not found
/macqiime/QIIME/bin/print_qiime_config.py: line 12: __maintainer__: command not found
/macqiime/QIIME/bin/print_qiime_config.py: line 13: __email__: command not found
from: can't read /var/mail/os
from: can't read /var/mail/os.path
from: can't read /var/mail/sys
from: can't read /var/mail/unittest
from: can't read /var/mail/shutil
from: can't read /var/mail/subprocess
from: can't read /var/mail/optparse
/macqiime/QIIME/bin/print_qiime_config.py: line 23: core_dependency_missing_msg: command not found
/macqiime/QIIME/bin/print_qiime_config.py: line 25: try:: command not found
from: can't read /var/mail/numpy
/macqiime/QIIME/bin/print_qiime_config.py: line 27: except: command not found
/macqiime/QIIME/bin/print_qiime_config.py: line 28: syntax error near unexpected token `('
/macqiime/QIIME/bin/print_qiime_config.py: line 28: `    raise ImportError, "%s\n%s" % (e,core_dependency_missing_msg)'

attached image.

thanks a lot.
Captura de pantalla 2017-01-10 a la(s) 14.23.26.png

Stefan Janssen

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Jan 11, 2017, 5:46:31 PM1/11/17
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Have you seen my other reply to you request?

"Hi Alfredo,

it look to me that you are using the wrong interpreter when calling the qiime command. Try this command "/macqiime/bin/python print_qiime_config.py" If that work, it would mean that the shell is not finding the python binary in your PATH. You can provide this information by setting the PATH environment variable: "export PATH=/macqiime/bin:$PATH".

Hope that helps,
Stefan"

Dendroctonus

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Jan 11, 2017, 11:53:08 PM1/11/17
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hi Stefan
I executed your comments but i can´t install qiime 1.8.0.
when write the first comment the result is :
MacQIIME MacBook-Pro-de-Alfredo:~ $ /macqiime/bin/python print_qiime_config.py
Python 2.7.3 (default, Dec 19 2012, 09:12:08) 
[GCC 4.2.1 (Apple Inc. build 5666) (dot 3)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> 

after the next instruction:
Last login: Wed Jan 11 22:35:48 on ttys002
MacBook-Pro-de-Alfredo:~ Alfredo$ export PATH=/macqiime/bin:$alfredo
MacBook-Pro-de-Alfredo:~ Alfredo$ 
MacBook-Pro-de-Alfredo:~ Alfredo$ export PATH=/macqiime/bin:$PATH
MacBook-Pro-de-Alfredo:~ Alfredo$ 

could you help me??
My mac OSX is 10.8 mountain lion, qiime is v. 1.8.0, python is 2.7.3

Best
Juan

I don´t know where is the problem

after of all

MacQIIME MacBook-Pro-de-Alfredo:~ $ pwd
/Users/Alfredo
MacQIIME MacBook-Pro-de-Alfredo:~ $ whereis macqiime
/usr/bin/macqiime
MacQIIME MacBook-Pro-de-Alfredo:~ $ whereis python
/usr/bin/python
MacQIIME MacBook-Pro-de-Alfredo:~ $ whereis java
/usr/bin/java

Stefan Janssen

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Jan 12, 2017, 10:08:21 AM1/12/17
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I reached out to a co-worker actually using a Mac. Stay tuned.

Jamie Morton

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Jan 12, 2017, 2:14:26 PM1/12/17
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Hi Dendroctonus,

That does look like some weird path configuration.

Could you return the outputs following commands


which print_qiime_config.py


/macqiime/bin/python `which print_qiime_config.py`


echo $PATH


head `which print_qiime_config.py`

There could be multiple causes to this, but getting these outputs would help narrow down the the possibilities.

Best,
Jamie
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