Problem with install of qiime 1.8.0

[Dendroctonus]

Hi everyone

i have been working with qiime 1.8.0, however recently,  i have need install qiime 1.8.0 in other macbook pro, however i can´n yet.

Someone could help me, I do not know what happens, I install it, I uninstall it and reinstall it, but it does not run

the messege is :

MacQIIME MacBook-Pro-de-Alfredo:~ $ print_qiime_config.py

from: can't read /var/mail/__future__

/macqiime/QIIME/bin/print_qiime_config.py: line 5: __author__: command not found

/macqiime/QIIME/bin/print_qiime_config.py: line 6: __copyright__: command not found

/macqiime/QIIME/bin/print_qiime_config.py: line 7: __credits__: command not found

/macqiime/QIIME/bin/print_qiime_config.py: line 8: Justin Kuczynski,: command not found

/macqiime/QIIME/bin/print_qiime_config.py: line 9: Emily TerAvest]: command not found

/macqiime/QIIME/bin/print_qiime_config.py: line 10: __license__: command not found

/macqiime/QIIME/bin/print_qiime_config.py: line 11: __version__: command not found

/macqiime/QIIME/bin/print_qiime_config.py: line 12: __maintainer__: command not found

/macqiime/QIIME/bin/print_qiime_config.py: line 13: __email__: command not found

from: can't read /var/mail/os

from: can't read /var/mail/os.path

from: can't read /var/mail/sys

from: can't read /var/mail/unittest

from: can't read /var/mail/shutil

from: can't read /var/mail/subprocess

from: can't read /var/mail/optparse

/macqiime/QIIME/bin/print_qiime_config.py: line 23: core_dependency_missing_msg: command not found

/macqiime/QIIME/bin/print_qiime_config.py: line 25: try:: command not found

from: can't read /var/mail/numpy

/macqiime/QIIME/bin/print_qiime_config.py: line 27: except: command not found

/macqiime/QIIME/bin/print_qiime_config.py: line 28: syntax error near unexpected token `('

/macqiime/QIIME/bin/print_qiime_config.py: line 28: `    raise ImportError, "%s\n%s" % (e,core_dependency_missing_msg)'

attached image.

thanks a lot.

[Stefan Janssen]

Have you seen my other reply to you request?

"Hi Alfredo,

it look to me that you are using the wrong interpreter when calling the qiime command. Try this command "/macqiime/bin/python print_qiime_config.py" If that work, it would mean that the shell is not finding the python binary in your PATH. You can provide this information by setting the PATH environment variable: "export PATH=/macqiime/bin:$PATH".

Hope that helps,
Stefan"

[Dendroctonus]

hi Stefan

I executed your comments but i can´t install qiime 1.8.0.

when write the first comment the result is :

MacQIIME MacBook-Pro-de-Alfredo:~ $ /macqiime/bin/python print_qiime_config.py

Python 2.7.3 (default, Dec 19 2012, 09:12:08) 

[GCC 4.2.1 (Apple Inc. build 5666) (dot 3)] on darwin

Type "help", "copyright", "credits" or "license" for more information.

>>> 

after the next instruction:

Last login: Wed Jan 11 22:35:48 on ttys002

MacBook-Pro-de-Alfredo:~ Alfredo$ export PATH=/macqiime/bin:$alfredo

MacBook-Pro-de-Alfredo:~ Alfredo$ 

MacBook-Pro-de-Alfredo:~ Alfredo$ export PATH=/macqiime/bin:$PATH

MacBook-Pro-de-Alfredo:~ Alfredo$ 

could you help me??

My mac OSX is 10.8 mountain lion, qiime is v. 1.8.0, python is 2.7.3

Best

Juan

I don´t know where is the problem

after of all

MacQIIME MacBook-Pro-de-Alfredo:~ $ pwd

/Users/Alfredo

MacQIIME MacBook-Pro-de-Alfredo:~ $ whereis macqiime

/usr/bin/macqiime

MacQIIME MacBook-Pro-de-Alfredo:~ $ whereis python

/usr/bin/python

MacQIIME MacBook-Pro-de-Alfredo:~ $ whereis java

/usr/bin/java

[Stefan Janssen]

I reached out to a co-worker actually using a Mac. Stay tuned.

[Jamie Morton]

Hi Dendroctonus,

That does look like some weird path configuration.

Could you return the outputs following commands

which print_qiime_config.py

/macqiime/bin/python `which print_qiime_config.py`

echo $PATH

head `which print_qiime_config.py`

There could be multiple causes to this, but getting these outputs would help narrow down the the possibilities.

Best,

Jamie