Error in MacQiime Tutorial with denoise_wrapper.py

18 views
Skip to first unread message

Lara Gulmann

unread,
Jul 24, 2013, 1:58:15 PM7/24/13
to qiime...@googlegroups.com
I recently updated to 1.7.0 MacQiime, but when I attempted to run through the qiime tutorial, I received an error when I attempted to denoise the tutorial dataset.  I received the following error.

Any suggestions on what should be done to get the denoise_wrapper.py to work??

thanks!

 File "/macqiime/QIIME/bin/denoise_wrapper.py", line 163, in <module>
    main()
  File "/macqiime/QIIME/bin/denoise_wrapper.py", line 149, in main
    titanium=opts.titanium)
  File "/macqiime/lib/python2.7/site-packages/qiime/denoise_wrapper.py", line 37, in fast_denoiser
    verbose=verbose, titanium=titanium)
  File "/macqiime/lib/python2.7/site-packages/qiime/denoiser/flowgram_clustering.py", line 612, in denoise_seqs
    verbose=verbose, squeeze=squeeze, primer=primer)
  File "/macqiime/lib/python2.7/site-packages/qiime/denoiser/preprocess.py", line 197, in preprocess
    flowgrams, header = cat_sff_files(map(open, sff_fp.split(',')))
AttributeError: 'list' object has no attribute 'split'

Jose Carlos Clemente

unread,
Jul 24, 2013, 2:00:41 PM7/24/13
to qiime...@googlegroups.com
Lara,

please check this thread:


Jose

--
 
---
You received this message because you are subscribed to the Google Groups "Qiime Forum" group.
To unsubscribe from this group and stop receiving emails from it, send an email to qiime-forum...@googlegroups.com.
For more options, visit https://groups.google.com/groups/opt_out.
 
 

Reply all
Reply to author
Forward
0 new messages