Hi all,
While using ubuntu 17.04 join_paired_ends.py was working fine,but after installing ubuntu 17.10 it is not working.??
Error:
Traceback (most recent call last):
File "/home/saikiran/anaconda2/bin/join_paired_ends.py", line 178, in <module>
main()
File "/home/saikiran/anaconda2/bin/join_paired_ends.py", line 155, in main
working_dir=output_dir)
File "/home/saikiran/anaconda2/lib/python2.7/site-packages/bfillings/fastq_join.py", line 180, in join_paired_end_reads_fastqjoin
HALT_EXEC=HALT_EXEC)
File "/home/saikiran/anaconda2/lib/python2.7/site-packages/burrito/util.py", line 201, in __init__
self._error_on_missing_application(params)
File "/home/saikiran/anaconda2/lib/python2.7/site-packages/burrito/util.py", line 468, in _error_on_missing_application
"Is it in your path?" % command)
burrito.util.ApplicationNotFoundError: Cannot find fastq-join. Is it installed? Is it in your path?
I have tried
sudo apt install ea-utils
then
The following packages have unmet dependencies:
ea-utils : Depends: r-cran-getopt but it is not going to be installed
Depends: r-cran-hmisc but it is not going to be installed
Depends: r-cran-formula but it is not going to be installed
Depends: r-cran-ggplot2 but it is not going to be installed
E: Unable to correct problems, you have held broken packages.
Pls help