I am trying to run the core_diversity_analyses.py and, although I get output files I keep getting:
/macqiime/anaconda/lib/python2.7/site-packages/numpy/core/fromnumeric.py:2507: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`.
I checked into this and previous problems that are similar said that it requires a download of scipy 0.15, but I am already running this version. Any thoughts?